Query= MSMg01no079_l20.b1 MSMg01no079_l20.b1 CHROMAT_FILE:
MSMg01no079_l20.b1 PHD_FILE: MSMg01no079_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
(556 letters)
>mm_chr12_118764770_118765726
Length = 957
Score = 961 bits (497), Expect = 0.0
Identities = 539/553 (97%), Gaps = 1/553 (0%)
Strand = Plus / Minus
Query: 5 gaattc-tgtcactatgactcacaacaaatccttccttcttagagttgatttgttcaagt 63
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattcatgtcattatgactcacaacaaatccttccttcttagagttgatttgttcaagt 537
Query: 64 gtttcttcactgtggtgaaaagagactacccaggtaggattcttgaccaaatgaactgtt 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtttcttcactgtggtgaaaaaagactacccaggtaggattcttgaccaaatgaactgtt 477
Query: 124 accacatcacaaagtttatgtaaaactaacccttattaacgcattgaaaccggtctatgt 183
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 476 accacatcacaaagtttatgtaaaactaacccttattaacacattgaaacgggtctatgt 417
Query: 184 tgccgtctcttccagataaagtgcttgaagacctgttgttcccaatgttctctggcccaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgccgtctcttccagataaagtgcttgaagacctgttgttcccaatgttctctggcccaa 357
Query: 244 atttatatctttttatcaggatcttcgtaaatcaactaaggtcacacaaaattcctaaga 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 356 atttatatctttttatcaggatcttcgtaagtcaactaaggtcacacaaaattcctaaga 297
Query: 304 gtctgtaagataggcttgctcggggtttattctgtgcctagctttggtcagtttccacag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtctgtaagataggcttgctcggggtttattctgtgcctagctttggtcagtttccacag 237
Query: 364 atgattaacatcaacaagcaggaagatgcatacagtggtgccactcatgtgtggggaata 423
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 236 atgattaacatcaagaagcaggaagatgcatacagtggtgccattcatgtgtggggaata 177
Query: 424 cgttcctggatccctaggagatacttgaaactatggatattataaccctacatataagag 483
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 176 cgttcctggatccctaggagatacttggaactatggatattatagccctacatataagag 117
Query: 484 gtttttcctatgaaaaactaagcagaataggcacggtaagagagtgctagcaacgtagcc 543
|||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct: 116 gtttttcctatgaaaaactaagcagagtaggcacaataagagagtgctagcaacatagcc 57
Query: 544 cagggagtggttt 556
|||||||||||||
Sbjct: 56 cagggagtggttt 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_l20.g1 MSMg01no079_l20.g1 CHROMAT_FILE:
MSMg01no079_l20.g1 PHD_FILE: MSMg01no079_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
(495 letters)
>mm_chr12_118608292_118609186
Length = 895
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 1 cagtacagccagggcggtgtagagagaccctgtctcaacaa-caaacaaacaaacaaaaa 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 cagtacagccagggcggtgtagagagaccctgtctcaacaaacaaacaaacaaacaaaaa 259
Query: 60 caggtttatggcaagtagggtaaagtagggagtttgcttagtgttctgtcttagaatatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggtttatggcaagtagggtaaagtagggagtttgcttagtgttctgtcttagaatatt 319
Query: 120 taccactttacattgaattaagatgcttaattgactaattagtgaattccccaatagttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taccactttacattgaattaagatgcttaattgactaattagtgaattccccaatagttg 379
Query: 180 gcattatggtttgaagctgcagtgtaccctaaaggctcacctagtccacacctattctac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcattatggtttgaagctgcagtgtaccctaaaggctcacctagtccacacctattctac 439
Query: 240 agctgaaggttctgtttgggggaactgtgaaattatgcagactgtggccaagctctggcg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 agctgaaggttctgtttgggggaactgtgaaattatgcagactgtggccaagctctggtg 499
Query: 300 gccttgagggtggcatccagctctagattcttatattccctgctttccaacccatcaagc 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 gccttgagggtggcatccagctctagattcttatattccctgctttctaacccatcaagc 559
Query: 360 tgagagaagctaccgtagcaagttcctcctgcagactggctgctctaactggcatgtcgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgagagaagctaccgtagcaagttcctcctgcagactggctgctctaactggcatgtcgc 619
Query: 420 ccaggccatgatgggctatgctatctaacctatgagcccaaatatccctcactctttaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaggccatgatgggctatgctatctaacctatgagcccaaatatccctcactctttaag 679
Query: 480 ctgctcactcatgctg 495
|||||||||||||||
Sbjct: 680 ttgctcactcatgctg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
