CATAATTTGCGGCGCTAAACGACTACTATATCCAGAGATCCGCGGAATTC
TACATGCCACCAGGCATCTGGAAGAGAGAGTCACTGGGTCTGACTTGACC
ATTTGAAACTGCAAAGCCCACCCTGAGCAACACATTTCCTTCAACAAGGT
CACATCTACTCCAATAAGTTCACACCTACTAATAGTGACACTTCCTTGTT
ACCAAACATTTAAATCAATGAGTCTATTTTTATTCAAACTAACCCAATTT
TTAATTTTGAAGAGACCTTGTAACTTGCATTGTGTCTCATATCACCTTTG
CTCTGAGGATAACTAAAGGCTATATATTTAAAGTTTTATCTGCTTATATA
ATCCATGTTCTTGATGATTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTT
GCTTTTGGTTCCTCCTTAACTGATTTCTCCGGGCATTTGTTGAGCTTTAA
CTGTTCATATTATAGCTCTAATTGAGTACATGGGTTTGTGTTTCTCTGGG
TAGCCTGACTTGACATTTTTTCCTTGGACTTTTTCTTTGAATCGGTTTTC
CAGCATTTGTAGGGCTATGAAAGCCTGGCTTTTATAATTATAAAAAATAC
GCATGATGGTTGAAGGCCCCAGCATTCTGTACTTATCTTTTAACATGTTT
TCCGATGCCCTATTCCCCCCCTTTTTC

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTATACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCGTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTTCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACCATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAATCTAGGATACCCAAGATATAAGATACAATTTCCTA

Query= MSMg01no080_d22.b1 MSMg01no080_d22.b1 CHROMAT_FILE:
MSMg01no080_d22.b1 PHD_FILE: MSMg01no080_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:05 2005
         (536 letters)



>mm_chr12_46425299_46426234
          Length = 936

 Score =  934 bits (483), Expect = 0.0
 Identities = 517/531 (97%), Gaps = 6/531 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacatgccaccaggcatctggaagagagagtcactgggtctgacttgaccattt 65
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctacatgccagaaggcatctggaagagagagtcactgggtctgacttgaccattt 270

                                                                       
Query: 66  gaaactgcaaagcccaccctgagcaacacatttccttcaacaaggtcacatctactccaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaactgcaaagcccaccctgagcaacacatttccttcaacaaggtcacatctactccaa 330

                                                                       
Query: 126 taagttcacacctactaatagtgacacttccttgttaccaaacatttaaatcaatgagtc 185
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 331 taagttcacacctactaatagtgacacttccttgtcaccaaacatttaaatcaatgagtc 390

                                                                       
Query: 186 tatttttattcaaactaacccaatttttaattttgaagagaccttgtaacttgcattgtg 245
           ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 391 tatttttattcaaactaacccaatttttaattttga-----ccttgtaacttgcattgtg 445

                                                                       
Query: 246 tctcatatcacctttgctctgaggataactaaaggctatatatttaaagttttatctgct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctcatatcacctttgctctgaggataactaaaggctatatatttaaagttttatctgct 505

                                                                       
Query: 306 tatataatccatgttcttgatgatttttctctttttttttttttttttttttttttgctt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tatataatccatgttcttgatgatttttctctttttttttttttttttttttttt-gctt 564

                                                                       
Query: 366 ttggttcctccttaactgatttctccgggcatttgttgagctttaactgttcatattata 425
           ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 ttgtttcctccttaactgatttctccgggcatttgttgagttttaactgttcatattata 624

                                                                       
Query: 426 gctctaattgagtacatgggtttgtgtttctctgggtagcctgacttgacattttttcct 485
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 625 gctctaattgagtacatgggtttgtgtttctctgtgtagtctgacttgacattttttcct 684

                                                              
Query: 486 tggactttttctttgaatcggttttccagcatttgtagggctatgaaagcc 536
           || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtactttttctttgaatcggttttccagcatttgtagggctatgaaagcc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)