BAC Information

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BAC

Clone NameMSMg01-080I05
Chromosome12 (Build37)
Map Location 116,566,763 - 116,567,235
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58
Downstream geneEG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I05.T7 (MSMg01no080_i05.b1)MSMg01-080I05.TJ (MSMg01no080_i05.g1)
ACCAG301331AG301332
length694687
length of high quality
(start - end)		477 (44 - 520)483 (72 - 554)
definitionCHROMAT_FILE: MSMg01no080_i05.b1 PHD_FILE: MSMg01no080_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:26 2005CHROMAT_FILE: MSMg01no080_i05.g1 PHD_FILE: MSMg01no080_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCACACTCTTGAACAGTGAAAGAACTGCCCACTTCCTCCAGCATAC
GTGTTTACTGCTGACTAAAAACAGAAAGAGGGTACTAACCTAACATGTGC
CTTGCTTCCCCTTACAAAAATCAGGGCAATCTTTGAGTATCTGGTGGAGA
TGGAGGAGGAGGTTGTAACTAGGACAGGAAACCATTCCTTAAACCCTCTG
ATGGCTGGATCTAAATGAGACAGAAGGGCAGGCAGCCAGGGACTTCAAAA
TGTATGTGACAAATGATACTTACAGTCAGTGGGTCCTTACCAAAAAAAAA
AAAAAAAAAAAAAAACAGACCCATAGAAGAGCCAAGCCTATCCCAGACCA
GCTGAAAGCTAAAGGGCTCAATCCTTAGGGTTTCAGAAGGTTGTGTCTAC
CCAGACTTGTACTCAGAGAACAGGGTCCAGGCATTTTCACCACACTCTAA
ATCCTTAAGAGATCTGTCACCAACATAGATAACTACTGTCTGTGAGGAAG
CATTCCCCTATTCAAGACTAAACAAAGGATAACAGTGGGTGGCAACAATC
CCAAAGGTTTTGCTCAGTGGCATACCTTGGTGCCCAATTCAGTTAGACTT
TCACCTCCCCCTTAACAAGGGAATATTTGCAACGCGTTGTTCTC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGATGGAATCATGGGAGGGACACATCTG
TGCTCAAGACTCAGTGTTTTCTTGCTGCCCTCAGTTGCTCTGGCCCAAGT
ACTGTCTGATGTAGGCAACAAAGACCCTGATCGCTCTTGTTTACACCTTA
TTAAAAATGGAAACTGCTAGAGCTGTATCCATCTATCATTAGGAAAGAGG
ATGACACTGAGGACATCAGTGATGATAATAAAGAAACAACTTAAATTCAG
ATGCTGAGACACCAGTCATCTTCAAGAGATAAAGAAGAGCCATTTTTCCC
TGTGGCTAAACCCTGTAAGCACCCTCTTTGCAGGGATATGTTACTATTCA
ATTCAGACTGGATAATTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTA
GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC
CCCCACTCCCCTATCCACCCATTCCCTCTTTTTGGCCCTGGTGTTCCCCT
GTTCTGGGGCCAACATTTTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG
ATGGCCTGATAGGCCATCTCTTGATACACATGCAGCTATAGTCAGATCTC
CGGCTTACTGTTCAATTCATAATGCCGCTCCCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i05.b1 MSMg01no080_i05.b1 CHROMAT_FILE:
MSMg01no080_i05.b1 PHD_FILE: MSMg01no080_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:26 2005
         (477 letters)



>mm_chr12_116566559_116567435
          Length = 877

 Score =  915 bits (473), Expect = 0.0
 Identities = 473/473 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcacactcttgaacagtgaaagaactgcccacttcctccagcatacgtgttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcacactcttgaacagtgaaagaactgcccacttcctccagcatacgtgttta 264

                                                                       
Query: 65  ctgctgactaaaaacagaaagagggtactaacctaacatgtgccttgcttccccttacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgctgactaaaaacagaaagagggtactaacctaacatgtgccttgcttccccttacaa 324

                                                                       
Query: 125 aaatcagggcaatctttgagtatctggtggagatggaggaggaggttgtaactaggacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatcagggcaatctttgagtatctggtggagatggaggaggaggttgtaactaggacag 384

                                                                       
Query: 185 gaaaccattccttaaaccctctgatggctggatctaaatgagacagaagggcaggcagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaccattccttaaaccctctgatggctggatctaaatgagacagaagggcaggcagcc 444

                                                                       
Query: 245 agggacttcaaaatgtatgtgacaaatgatacttacagtcagtgggtccttaccaaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggacttcaaaatgtatgtgacaaatgatacttacagtcagtgggtccttaccaaaaaa 504

                                                                       
Query: 305 aaaaaaaaaaaaaaaaaacagacccatagaagagccaagcctatcccagaccagctgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaaaaaaaaaaaaaacagacccatagaagagccaagcctatcccagaccagctgaaa 564

                                                                       
Query: 365 gctaaagggctcaatccttagggtttcagaaggttgtgtctacccagacttgtactcaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctaaagggctcaatccttagggtttcagaaggttgtgtctacccagacttgtactcaga 624

                                                                
Query: 425 gaacagggtccaggcattttcaccacactctaaatccttaagagatctgtcac 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaacagggtccaggcattttcaccacactctaaatccttaagagatctgtcac 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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