BAC Information

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BAC

Clone NameMSMg01-080K10
Chromosome12 (Build37)
Map Location 51,546,994 - 51,547,213
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K10.T7 (MSMg01no080_k10.b1)MSMg01-080K10.TJ (MSMg01no080_k10.g1)
ACCAG301437AG301438
length719786
length of high quality
(start - end)
250 (67 - 316)71 (69 - 139)
definitionCHROMAT_FILE: MSMg01no080_k10.b1 PHD_FILE: MSMg01no080_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:37 2005CHROMAT_FILE: MSMg01no080_k10.g1 PHD_FILE: MSMg01no080_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAGAGGATCCGCGGAATTC
CTTCTCTGCCGCGGAGCAGTACAGCACAACTTTCTGAAACCTGGAAAGCA
ATGTTCTGTGCTTCCCAACGTTGTATCCACTGTCACTTGTGCCCATAGAG
AACTTGAACTTATGTCTGAAGAAGGGGATCCTGCACTTTCTTAAATTTAA
GAATATCGCTATGTGGTCAATGGTTGCCATACTGGGGATGAAGCTGTATA
GGTCCTTACAGTTCACCTGGCTTTGTTTTCTGCTGTTAAGCTGGTGACTG
CCCAGTGAACCTTTATTCTCCTGCCCCACTCCATTCTACACCTTCTATGA
GTTCTTTGGTTGTTTCTCATCTACGACCACTTTCATAGCTTACTTATCTT
CTTATATACCCCGACCGTATTACCGCTAATATCTTCAGGAATTCTTTAGC
CTAGTTCATGCACCTTCTCATTGCTTTTTGATACACCCACCCCGTCGATT
CTTGTTTTTTACACGAAGTTGATCCTTTGAACTTCCATGTCCTTGCGACC
AATCCTGTTTGTTATCCCTTTTTTTCCTTTTATTTCCTTTCTTTCCCTTC
CTGTCCCTTTTTTATACCTTTTATTTTTATTTTCTTCCCCCTTTTCCGCC
CCCGATTTTTTTCTTCCCCCTTCTCCCTGCCCCCCTTTTCCTTTTTTTTT
TTTCTTCCCCCTCCCTTTT
GCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTTGTGCAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTCTTTTTTTTCC
CTTTCCCCTNTTTTTTCTCCTTCCTCTCTCCCTCTCTTTTCTTTTTTTAT
TTCTCCCTTCCCCTTTTCCCCTTTCCCCTTCTTTCTTTCTCCTTCTTTTC
CCCCATTCTCCTTTTTCCCCCCTCCCTTTTCCCTCCTCCCCCCTTTTTGC
CTCCTTTCCTTCACCCTTCCCCCCCCCCTTTTTTTTTTTTTTCTCCCTTC
CCCCTCTCCTCCCTTTTCTTTTCTTTTTTGTTTCTCCCCTCCCATTTCCC
CTCCTCCGCTTTTATTTTTTTTTATTTTCTTTTTTCCCCCCCCCTCTCTT
TTTTCCTTTCTTCTCTTCCTCTCCCTTTTTTTCTCCTCTTTTCGTCCCCT
TTCCTTTTCTTCCCCCTTTTTCTTTTCTCCTTCTCTCCCCCCTTCTTTTT
TTCTCTCCCTCCTCTTTTCCCCCCTCTCTCCTTCTTCTTTCCCTTTCCCT
CTCTTTCTTCTCCCTTTCCCTTTTTCTTCTCTTTCCCCCCTTTCTTTTTA
TCTCCTTTTTTTTCTTCGTTTTCTTTCCTCCCCTTTTGTTATTTTTTTCC
CCACCCCTTTATATTTTTTTGTCCTCTCTCCCCTCCCCCCTCCTTTTTTT
TCCCTCCCCCCTCTCCTTTTTCCTCTTTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k10.b1 MSMg01no080_k10.b1 CHROMAT_FILE:
MSMg01no080_k10.b1 PHD_FILE: MSMg01no080_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:37 2005
         (250 letters)



>mm_chr12_51546794_51547445
          Length = 652

 Score =  375 bits (194), Expect = e-108
 Identities = 213/220 (96%), Gaps = 2/220 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtacagcacaactttctgaaacctggaaagcaatgttctgtgcttcccaacgttgtat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 420 cagtacagcacaactttctgaaacctggaaagcaatgttctgtacttcccaacgttgtat 361

                                                                       
Query: 61  ccactgtcacttgtgcccatagagaacttgaacttatgtctgaagaaggggatcctgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 360 ccactgtcacttgtgcccatagagaacttgaacttatgtctgaagaaggggatcctgtac 301

                                                                       
Query: 121 tttcttaaatttaagaatatcgctatgtggtcaa--tggttgccatactggggatgaagc 178
           |||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||
Sbjct: 300 tttcttaaatttaagaatatcgctatgtgggcaaaatggttgccatactgaggatgaagc 241

                                                   
Query: 179 tgtataggtccttacagttcacctggctttgttttctgct 218
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 240 tgtagaggtccttacagttcacctggctttgttttctgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 652
Length adjustment: 9
Effective length of query: 241
Effective length of database: 643
Effective search space:   154963
Effective search space used:   154963
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)