BAC Information

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BAC

Clone NameMSMg01-081F24
Chromosome12 (Build37)
Map Location 51,390,949 - 51,391,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517, LOC636070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081F24.T7 (MSMg01no081_f24.b1)MSMg01-081F24.TJ (MSMg01no081_f24.g1)
ACCAG301992AG301993
length731734
length of high quality
(start - end)
477 (71 - 547)420 (78 - 497)
definitionCHROMAT_FILE: MSMg01no081_f24.b1 PHD_FILE: MSMg01no081_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:33 2005CHROMAT_FILE: MSMg01no081_f24.g1 PHD_FILE: MSMg01no081_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGTTTACCTCAGTAGTTTCTTATTGTTTTTTGTTATAGTTAT
CATGTGATTTTGTATTTCTATATGAAGCTGACCATTGTCCTTTCAAGATC
TGTGAAGAATTCTGTTGAAATTCTTTTATTCACTTTATATCCCAATCATG
CCCCCTGCCTCAGGACAAAACTTAGAAAAGCCTAACTTTCCTCTACCCTA
GGCTGACCCTGAACTCAGGATCATCTGCCTTTGTAAGCATAAACAAAAAA
CTTAGCTGAGTAGGATCTCTTGACATCACCACTTCCTAAATTTCTTTATC
TCCTTCCTTAGTAGTTTTCTAATTTGTTAGCTCACAGGGCAGCTGCTTTT
GTTCCTTTAGATTCATGAAGCCCCTCATATAATCCATATTGCATCCTTAT
GTTTTGCAGAGTTGAGAAAGAACTTATTTTCGAATTTTGTATTTAGATTC
TTTTCCATAGCCTTAAGGGCTGTCTCAGTGCTTACTGTTTTGCTGAGACA
TAGCCACACCCTTGACTCCTGTATTCATGCTGTTTCTAATTAACATGGAG
TCATTACCATAAACAAGGAGAAATTTCCTCAGAAGAACAGAGTGCTCCAC
TACTAGTACTGGTTCTAGGACAAATGTGCTTTATTACAGAAACAAGTCTT
AAGCCCACAGCTGAAATCAGTACTCTCGAAT
CGATGAATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGGTGGGGAGGCAGGAGTGGGTGG
GTGGGGGCACACTTTCATAGAAACAGGAAAAGGAGGGATGGGATAGGGAG
GTTCTAGAGGGGATATCGGGAAAGAGGATAACATTTGAAAGTAAATAGAT
AAAATATCCAATAAAAATGACTAAGCATAAAAATAAATAATGGGTATACA
TAGTTAAATAACATAAAACAATAAAGTATCAATTATTATATGTTAATTTA
AGAATCTAAACTGAAGAATTAATTTAGAACTGGTTGAAAATTTTTAATTA
AATGTAAAATTTATCGAGCCAAATGCCACTTTAAATCAAATTTCCTTAGT
CATTTGGTAGTTTATAAGTGAACTGTAGAAAATTGATTTTAAAAAACTCA
GACTTATGTTAAATCTATGGTTACACATCAAATAATTCTTAAATTCCAAA
ACTAATTTATTAAAATGATATCATATGAATAGTTATTACTTGTAATATTC
GTGTGATATTATAACATTTTATGCTTATTGAAGCTAATATAATATTAGAT
ACTATTTAAATTTTAACAGTAAGCTTACAATTCTATGAACAAATTGTGAT
CAAAATAAATTTCCTATTTAAAACCTGTAAATTAAGAATGAGATAATTTT
ACTTCTGACCATAACAACGTCACCTCTCGTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_f24.g1 MSMg01no081_f24.g1 CHROMAT_FILE:
MSMg01no081_f24.g1 PHD_FILE: MSMg01no081_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:33 2005
         (420 letters)



>mm_chr12_51390749_51391568
          Length = 820

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggggaggcaggagtgggtgggtgggggcacactttcatagaaacaggaaaaggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggggaggcaggagtgggtgggtgggggcacactttcatagaaacaggaaaaggaggg 260

                                                                       
Query: 61  atgggatagggaggttctagaggggatatcgggaaagaggataacatttgaaagtaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggatagggaggttctagaggggatatcgggaaagaggataacatttgaaagtaaata 320

                                                                       
Query: 121 gataaaatatccaataaaaatgactaagcataaaaataaataatgggtatacatagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaaatatccaataaaaatgactaagcataaaaataaataatgggtatacatagttaa 380

                                                                       
Query: 181 ataacataaaacaataaagtatcaattattatatgttaatttaagaatctaaactgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacataaaacaataaagtatcaattattatatgttaatttaagaatctaaactgaaga 440

                                                                       
Query: 241 attaatttagaactggttgaaaatttttaattaaatgtaaaatttatcgagccaaatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaatttagaactggttgaaaatttttaattaaatgtaaaatttatcgagccaaatgcc 500

                                                                       
Query: 301 actttaaatcaaatttccttagtcatttggtagtttataagtgaactgtagaaaattgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actttaaatcaaatttccttagtcatttggtagtttataagtgaactgtagaaaattgat 560

                                                                      
Query: 361 tttaaaaaactcagacttatgttaaatctatggttacacatcaaataattcttaaattc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaaaactcagacttatgttaaatctatggttacacatcaaataattcttaaattc 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)