Query= MSMg01no081_k16.b1 MSMg01no081_k16.b1 CHROMAT_FILE:
MSMg01no081_k16.b1 PHD_FILE: MSMg01no081_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:57 2005
(302 letters)
>mm_chr12_17152738_17153439
Length = 702
Score = 578 bits (299), Expect = e-169
Identities = 302/303 (99%), Gaps = 1/303 (0%)
Strand = Plus / Plus
Query: 1 catcttacaaaggcaacagtgccatcctgagacctccactctcacaacctcacctaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catcttacaaaggcaacagtgccatcctgagacctccactctcacaacctcacctaacac 259
Query: 61 tagtcacctgctaaaggtcccttctccaa-tatcttcccatgaaaccttagtgctgatga 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 tagtcacctgctaaaggtcccttctccaaatatcttcccatgaaaccttagtgctgatga 319
Query: 120 gtgggaactgaggactgcaaacattcagactcctgccaggaatcccccagctctgtaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgggaactgaggactgcaaacattcagactcctgccaggaatcccccagctctgtaaac 379
Query: 180 aaacacaggtaaagggtcccataacacagagacgggaccctctgaggatagaaatgtcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacacaggtaaagggtcccataacacagagacgggaccctctgaggatagaaatgtcat 439
Query: 240 gctgaagacacacttattatcagtccagtctttcccaggcaaaggaggaagatgtctata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctgaagacacacttattatcagtccagtctttcccaggcaaaggaggaagatgtctata 499
Query: 300 gat 302
|||
Sbjct: 500 gat 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_k16.g1 MSMg01no081_k16.g1 CHROMAT_FILE:
MSMg01no081_k16.g1 PHD_FILE: MSMg01no081_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:57 2005
(358 letters)
>mm_chr12_17311887_17312640
Length = 754
Score = 634 bits (328), Expect = 0.0
Identities = 349/358 (97%), Gaps = 4/358 (1%)
Strand = Plus / Minus
Query: 1 tgtatgctggcaaggccttggcccggtttttcagatgaagtcattgttgcttaagaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgtatgctggcaaggccttggcccggtttttcagatgaagtcattgttgcttaagaggca 495
Query: 61 gccgcctttggggagtatgttttgaaagggtaggaaggctgggatggcaaaggccactct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 494 gccgcctttggggagtatgttttgaaagggtaggaaggctgggatggcaaaggctactct 435
Query: 121 ggaacaatattcctgcccaaggtatagacaggaaagactttcaggttgtatctggagcaa 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 ggaacaatattcctgcccaaggtatagacaggaaggactttcaggttgtatctggagcaa 375
Query: 181 aggttagtgtccagagctagcactgaagtgggagacgtgggagaggatcaaggataaaga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 374 aggttagtgtccagagctagcactgaagtgggagatgtgggagaggatcaaggataaaga 315
Query: 241 gagtatggtcactaacccagaggccccctgagctcctgtagatagatcattgtcatcctc 300
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 314 gagtatggccactaacccagaggccccctgagctcctg----tagatcattgtcatcctc 259
Query: 301 cagagtgcccctgagagttcacaggtggtgggaaagagacccacggtgctcgacaccc 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 258 cagagtgcccctgagagttcacaggtggtgggaaagagacccacggtgctcggcaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 754
Length adjustment: 9
Effective length of query: 349
Effective length of database: 745
Effective search space: 260005
Effective search space used: 260005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
