BAC Information

Click to search

BAC

Clone NameMSMg01-082B23
Chromosome12 (Build37)
Map Location 73,721,059 - 73,721,347
singlet/doubletsinglet
Overlap geneLOC209183
Upstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik
Downstream geneLOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082B23.T7 (MSMg01no082_b23.b1)MSMg01-082B23.TJ (MSMg01no082_b23.g1)
ACCAG302565AG302566
length725716
length of high quality
(start - end)
289 (69 - 357)236 (121 - 356)
definitionCHROMAT_FILE: MSMg01no082_b23.b1 PHD_FILE: MSMg01no082_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:31 2005CHROMAT_FILE: MSMg01no082_b23.g1 PHD_FILE: MSMg01no082_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTGA
TTTTTCTTCTTACTTGGTTTGTGTTTTGTTTTGTTTCAAGCTAGGGTCTT
ACTAAGTAGTTCTACCCGTTCTGGTACATATTGTATAGACCGAATTGGCC
TAGAACTCAGAGAGATCTTGCTTGCCTCTACCTCCCAAGTGCTGGGATTA
AAGGCATGCATCCCTATACCTGAATTGATTGTATCTTCTTACAGTTGACT
TTAGAAATGTAACATTGCTGTATTGATTCGTTGAATTAACAACATAACCA
CTCATCACTAGGAATTCCATTCATAGACCATGTCTTAGGGTTTCTATGCC
TGCATAAAACATCACGGCCAACAAGCAAGTTGGGGAGGAAAGGGTTTATT
CGGCTTACAATTCCACACAGCTGTTTATCACCAAGGAAGTCAGGACTGGA
ACTCAAACAGGTCAGGAAGTAGGAGCTGATGCATAGGCCATGGAGGGATG
TTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGA
ACCAAGACTACCAGCCCAAAGATGATCCCACCCACAAGGGGCCCTTTCCC
CCCTTGATCACTCACTTAATTGAGAAAATGCCCTTATAGTCTGCATTCTC
ATGGAGGCATTTTCCTCAACTTGAAGCTCCCTTTTCTCTGTGAAAAACTC
CAGGCTGTGTTCAAGTTTGACCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAAATCATTTGAAATCCTTTTACCTCTCAGTGTATTGAATT
TTCCACTTACCTTAAACCTTTAAAATAACAAAAACATCATTTTCCAATGT
TTTTCTTTCTTTTTTCTTCCTTTCATACACACACACAATATATATATATA
TATACATATATATATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATATGATGGATGTCAAGTGTTTTGCTCTGATGTTCTTCA
ACCTGCTTTTCCAAAATTATATCTCTTCTTGGACCAAGAACTGATCCTTC
TGTGTATATTGTCTGCCCCCCTCTCTTTTGACTAATCTAATTCTCAGGCA
TTATTTAACTTGTATAATCCATAATGAGCTACTTAATCAATGTGTCATTA
TTTGTGGGTTAATAACTGAATACTATTAGGTTTAAGGTTGGAGATAATTG
CATTAGAATTATAATTTAATGATATCATAAGTCTAAAAGGAGTTCACTTA
GAGCATTGTTTCACAGATTTGCGGATAGGACAAATTTTTTTTGTCACGCT
TTTAAAAAATGAATTATACTCAATTTGCCATTTACTTTTAACTCTTTTAA
ATGTTTTCCCTAAATTAATAATGCACGAATAATGGGCTTTCAAATTTGTT
CCACTCTTATTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_b23.b1 MSMg01no082_b23.b1 CHROMAT_FILE:
MSMg01no082_b23.b1 PHD_FILE: MSMg01no082_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:31 2005
         (289 letters)



>mm_chr12_73720705_73721393
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgttttgttttgtttcaagctagggtcttactaagtagttctacccgttctggtaca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||
Sbjct: 643 ttgtgttttgttttgtttcaagctagggtcttactaagtagctctaattgttctggtaca 584

                                                                       
Query: 61  tattgtatagaccgaattggcctagaactcagagagatcttgcttgcctctacctcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tattgtatagaccgaattggcctagaactcagagagatcttgcttgcctctacctcccaa 524

                                                                       
Query: 121 gtgctgggattaaaggcatgcatccctatacctgaattgattgtatcttcttacagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtgctgggattaaaggcatgcatccctatacctgaattgattgtatcttcttacagttga 464

                                                                       
Query: 181 ctttagaaatgtaacattgctgtattgattcgttgaattaacaacataaccactcatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctttagaaatgtaacattgctgtattgattcgttgaattaacaacataaccactcatcac 404

                                                            
Query: 241 taggaattccattcatagaccatgtcttagggtttctatgcctgcataa 289
           ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 403 taggaattccattcatagaccatgtcttagggtttctattcctgcataa 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)