BAC Information

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BAC

Clone NameMSMg01-082F12
Chromosome12 (Build37)
Map Location 67,483,149 - 67,483,412
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040700, EG238217
Downstream geneMdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082F12.T7 (MSMg01no082_f12.b1)MSMg01-082F12.TJ (MSMg01no082_f12.g1)
ACCAG302735AG302736
length697694
length of high quality
(start - end)
210 (67 - 276)291 (68 - 358)
definitionCHROMAT_FILE: MSMg01no082_f12.b1 PHD_FILE: MSMg01no082_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005CHROMAT_FILE: MSMg01no082_f12.g1 PHD_FILE: MSMg01no082_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACCTTATCCTCGTTTTGATTTGCATTCCTCTGATGACAGAAGAAGGC
AACCATTTCTTTAAGTCTTTCTCGGCCATTTCAGATTCCTCTATTGAGAA
TTGCTTTGTTTATATCTGAGCCCCGTTTTACAATTGGATTATTTAGGTTT
TTGAGACCTAGTTTCATAAGTTGTTTATATATTCTGAATATTAGTCCTCT
AGCAGATATAGAGTTGGTAAAAAAAAGAATCTGTCCCGTTCTGTAGGCTG
CCATTTTGTCCGATTGACAGTATCCTTTTCCTTATAGAAGAATTGCAGGT
ACCTGTTGATCTGAAAGCCTGTGCTATGAGCGTTCTGTTCATAAATGGTC
TCCTGTGCCTCACAGCTGAATGTTAGTCTCTACTTTCTTCATCCAGCAGG
ATCCATGTATCTGGATTTAGGTTGGTTGCTTTGATCCTGTTACTCGTGAC
TTTTTTGGAAGACAATAAGTATCGATCTATTTTTCTTCTTCTATGTGCAG
TCACCCTTTTTGATCTTTACCTTTTGTTTCAGATTCTATCCTTCCCGATT
GTTCTCTTTTTATATGATTAGATCATTTTAATCCACTCCACTAACTGTAA
TGCATCTAATCTCAGTTTATCCCATTACCCCCCCCTACCACTTTCAT
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCAGGTGAGAACCAATATGAAATTTAATCT
CTCTGTCAAAAGAAATTGAATTATAATCTCACACTTTGCTACAGCTCCTT
TTGAACACACAGGAATCTAGCCAAGGGCACAAATGTGTCTCAGAGAGATG
GAACACAGAATTCCACCAACATGCTCTCTTGGTAGACCTATGTTCAGGAA
ATAAGTCACTGAGAGAAGGCATTTTCCAAGTGCCCTGAAGGGAACAGTTA
CATGCGTGGTTGTGTGAAGACTAAAATCAAGGGTTGTGTGAAGACTATAA
TCAAGATAAGGCAAATTCAGCAAAGATCTTTAGTAATGACGTACTTGCAA
TTACCCCCCTACAAAAGAATATAAAGCTAAAAATAAATCCAAAAATATAA
AGCTTATAATATGAACTACAACCTGGGAAGAATATTTTCAAAGGTATATA
AAGATATCCGGTTTAGATTTTATTTTTGTCTGCTTAACACTGCGTAGGGA
CTTCTGAAGAGAGAACCTAGTTGAAGAATTGCCTTTACCAGATGGGTCGG
ATTGATTATCTGTGGTACATTGTCTTGATTAATTGCTGATAATGTTCACA
GCCTTACTCTGGCTTTTGCTTCTGTTCCCACTTGAGCTACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_f12.g1 MSMg01no082_f12.g1 CHROMAT_FILE:
MSMg01no082_f12.g1 PHD_FILE: MSMg01no082_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:47 2005
         (291 letters)



>mm_chr12_67482949_67483639
          Length = 691

 Score =  449 bits (232), Expect = e-130
 Identities = 256/264 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaggtgagaaccaatatgaaatttaatctctctgtcaaaagaaattgaattataat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttttcaggtgagaaccaatatgaaatttaatctttctgtcaaaagaaattgaattataat 260

                                                                       
Query: 61  ctcacactttgctacagctccttttgaacacacaggaatctagccaagggcacaaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacactttgctacagctccttttgaacacacaggaatctagccaagggcacaaatgtg 320

                                                                       
Query: 121 tctcagagagatggaacacagaattccaccaacatgctctcttggtagacctatgttcag 180
           |||||||||||||||| ||||||||| |||| ||||||  ||||||||||||||||||||
Sbjct: 321 tctcagagagatggaagacagaattctaccagcatgctggcttggtagacctatgttcag 380

                                                                       
Query: 181 gaaataagtcactgagagaaggcattttccaagtgccctgaagggaacagttacatgcgt 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 381 gaaataagtcactgagagaaggcattttccaagtgccctgaggggaacagttacatgcat 440

                                   
Query: 241 ggttgtgtgaagactaaaatcaag 264
           ||||||||||||||||||||||||
Sbjct: 441 ggttgtgtgaagactaaaatcaag 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)