BAC Information

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BAC

Clone NameMSMg01-082N06
Chromosome12 (Build37)
Map Location 100,830,493 - 100,830,637
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N06.T7 (MSMg01no082_n06.b1)MSMg01-082N06.TJ (MSMg01no082_n06.g1)
ACCAG303104AG303105
length982687
length of high quality
(start - end)
---146 (70 - 215)
definitionCHROMAT_FILE: MSMg01no082_n06.b1 PHD_FILE: MSMg01no082_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:24 2005CHROMAT_FILE: MSMg01no082_n06.g1 PHD_FILE: MSMg01no082_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATAATTTAGCGGCCGCTAAATACTAACTCACTATCCAAAGAGAGGAT
CACGCGAGAATTCATTTATTTTTCCCCATCAATTACCATTTATAATAACC
ATCACATTAGACCAATTCATTTAGTAAGCCACATATACATTATATTATAT
CATAAATGTATCTCATTCTCATTAAAACTCAGGCTATTGCATTACCTCTG
CTCGACATGACATACGTGAGTACACACAATGGATGTGTTCCCCAGGATGG
ACCCTGATTTAATAGGTAGCCACACAAATTGTTCATTGTCCCTAACTATC
ATTCGACTGGTCCCTAAATATAGGTAATCGCCNATGTTAACTCTAGTCGT
CCATAGTCACACGTACTATCAATGAATTTATATCTTCATCTTGATCACCA
ATGTGAATATGACTGCTATGATGTAAGTCGACCGTAGAAACAAAGTAAAC
CAGAAGACTAGATCTTTTGTGGTATTGACCACATGATTATACTTCGTCAT
CACACAGTATAACTCCCGGTCATTCTCAGCGAAGAGTGATGAGTACCATA
ATACACTTCTATACATCATGATTAGAATGCATCTTGATCACGGAATACTT
AACAAGGTATAATTATCCACTAATCTAAGATCCACAACATGATACCAACG
ACACCGGACGCAGAATCACTTCCTGCATAAAAGATGTACCATCAAACTAT
CACACTCCCAATATGTTTGAACTTGAACTCATACTATATTCCCTTGAATA
TGTTATATATATATGTCACGTCTATCATTTCTATCAACCAACATACACTA
TTGCACATCAGCATACTATAAACACCTACATTCAATATTAGCATTTTAAC
TCCTAACAAGTATTTCTCTATTACTCTCGTTCGAACACACCTTTTAACTA
CATACGCCACCCTACTTTAAACACATCCGTGTCTTTGCCATGTGCACTCA
CGCTGCCACTCCTCTAACTCTCCTATTCNCAT
ATGATGTGATAGGCCTGGCGCCGCCTGTCAAAGAAGTTAGGTGAACTATA
GATTGCCCGCGGAATTCCTAGTTTCACCACATTTTCTTGCACCAGCTGGT
TTGATAGAATAGTGGAGTGGCTTTTGGTCTTTTGAGGCCAGGTCTCAGAT
AGCTCAGCAGATGAGGCTTGTCCTGAATTCCAGACCTTTCTTCCTTCACC
TCTCATATACTTGGATTATAGGCATTGACCAAGCATCCTGATTTTTGAAC
ACTCAGGGTTTGTACGAGGTGAATGCCTTGCCGGTCTGCGTAGGGTTGCC
TAGGAAGCATTATGTGCCCTGATTCCACATCCAACGCACGTTGTTCTTTG
AAGGGTAAACATGGCATGTGACACACTAGTGTCCCTATAGAGCCCCAGAA
AGAACCTGCCTCTCCCTACCCCCACATTTCCATGTTGTGCTGACTTCTAG
TCTTATTGCCAAAGGTAAGAATATTGCTAAGGAGGCACACCGATGAACCC
ATTAGGCTGGAAGTTATGACTCTGTCCAACTGCTTTCCCCTCCTATTCTG
TGTAACCTTGCACGTCCTCTGTACAGTCTGTGGAGATCGATCTATGTTTT
GCCTGTAGAATCTCCTGAGGGAGCGATTTCCTGAAGAGGAAACATAAGAT
CTGATGTTTCGCTATACCAAATCAGTGATCATAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n06.g1 MSMg01no082_n06.g1 CHROMAT_FILE:
MSMg01no082_n06.g1 PHD_FILE: MSMg01no082_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:24 2005
         (146 letters)



>mm_chr12_100830292_100830837
          Length = 546

 Score =  257 bits (133), Expect = 2e-73
 Identities = 142/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtttcaccacattttcttgcaccagctggtttgatagaatagtggagtggcttttggtct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtttcaccacattttcttgcaccagctggtttgatagaatagtggagtggcttttggtct 261

                                                                       
Query: 62  tttgaggccaggtctcagatagctcagcagatgaggcttgtcctgaattccagacctttc 121
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 262 tttgaggccaggtctcagatagttcagtagatgaggcttgtcctgaattccagacctttc 321

                                    
Query: 122 ttccttcacctctcatatacttgga 146
           ||||||||||||||| |||||||||
Sbjct: 322 ttccttcacctctcaaatacttgga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)