BAC Information

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BAC

Clone NameMSMg01-082O08
Chromosome12 (Build37)
Map Location 99,307,445 - 99,307,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
Downstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O08.T7 (MSMg01no082_o08.b1)MSMg01-082O08.TJ (MSMg01no082_o08.g1)
ACCAG303156AG303157
length1,387698
length of high quality
(start - end)
---244 (70 - 313)
definitionCHROMAT_FILE: MSMg01no082_o08.b1 PHD_FILE: MSMg01no082_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:29 2005CHROMAT_FILE: MSMg01no082_o08.g1 PHD_FILE: MSMg01no082_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTACAATCTATGGCGGNGGCCCGCGGAAANNANNNGNANNNNCANTAA
AATTTTCGNNNAACNCNCCGCNCNCNNNGNNGNNGNAANNNNNNNNNNNN
NNANATAGANCTGGCNGCAGCNCNCGNCAAGGGANNNNNGNNNNNCCNNC
GCGCACANGNNCCNNCGCNCGCAACNCCNNCCGCGCGCAAANGNNNCGGC
GCGCCACAACAATTCACGCACCACGCACAGAAGAGCAGAGCAGGNAANGA
AAAGAGGAGANANNNNNNCGCACGCACCGCAGNCACACAGGCGAAGNCNC
GCACCGCAAGGGANGAGCANCGCGGCACGCCGGAGCCGCCGACGCACAAA
AAAAANGAGCGACGAAGACACAGCGNCGCCACCGCACGGAACGCCAGGAN
CACAAGNAGCAGAGGGGCAACGNGGGACGCCGANGNCAGGANACGCAACG
CCGAGNGCCNACACGCGCGCGCNCGGGTTTTATTTTTATGTACACACTAT
ACGCTACTCTGCNGCCGACANTCGTCTATAGAGCGAATATANANGNGAAT
GNTGGGCCACTCAAANCATCACACGACCCGGCCCCTGGGGNACAACACCC
CNATGTTCTTTGTAGTAANTTTTATCTCGACAACAACACCACGCGCGACC
CNGCAGGCAGCAAAGGCGCGCGCCACANAGAANANGAANNCACCACCGCA
CACCACGCCGNCNNGCAGANAAGAGNGNNGAGAGAGAANGGGGCAGANGA
CACCAAACCGCGGCGAGCGCGGAAGAGCACGGANAACCGCACCACACACA
GAAGGACANACACAGAGGCNGCGACNAGAANCCAGACGCCACANGCCANC
GAACACCGCCACACACCGGGGACCAGAACGAAGACCNAGCGACGCCCCNC
GAGGCCACACACGAGACGACGCCAGACACAGCGCGACGGAGCGCGCGANC
GACACAGGACCCCAAGNGACCACGCCGAGGGCCGCGAGCANACAACACGC
GCCAACGACACGNGAGCANGCACACACGCGCCGCGACCACGGAGGACAAN
NCACCCCCNCCGCACACGCCACCACGCCNGGNNGAGACAGCACGCCCGCA
CGCCACGGACAAACGGGGAANNNGGCAAAGGCNCNAANGAGCNCCNCGCG
CGACCAACGCAACCGCAGGGAGNAGGGCACACNAAGCAGCGAGAAAAACA
ACANNCCACGCCGCAACCACACGAACACACACGGGACAAACACCNCACAC
CAGGGCGCACACAGGCACGGATTTTCTTGTGTNATACGTTTTTTTGTATG
ACACCACTCCACCACNGCGCCAACGTCGTGGGGTGATANTATTCTCTCTA
CATCAACGCNCTGGCGCAACACTAGAGGCGGCAGGAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTGAATGATTGGTATGTCTTTGGCTCATCA
CAATGGACCCCTTCAGAAAGCTCTCCAGCCACTGGAATCTATTCCGATGA
GGTGATGGGGTGGCGGTGTGCTTGTGAGGGGTGGAATTCCAGACAGTTTC
AACATGGGAACCGATTACCAGAAGACCAAGTGCCACTTAGAGACAGGAGC
TTTTTGTACCAGCCTGGCCTTAGGGAGGGGAGTTAAGACTGGAAGTTGGT
TTATCAAAAGTTCATGTTTTACAGAGCTTTCTCTTGGGTGAACAGAGTAT
AACAACTGGAGAATGTTATAAAGCACGTTCTTGTGCCTAGGACCCTTTCA
TACATCACCCTGTGCACTTAATTAGACTATCCAATTGTATCCCTTATAAT
GACCTGTAATAGTAAGCATTAGCGTTTCCCTAGGTTCTATGAGTCATTAT
AGTAAATGAATATCCATATGTGTTCAGCTTGTCTCTTCAGATTATGAAAT
TTTAACATATACTATGCACTAATATTTTTTCCAGGATCTAGCTTATCTTA
TGACGCGCCTGATTTGTCTTGAATTCCTAATTATTGTTCTTAAGTCTGTT
TTTGTGCTGATTGCCCCTCTCACCAACTTGATATTTGAGCCTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o08.g1 MSMg01no082_o08.g1 CHROMAT_FILE:
MSMg01no082_o08.g1 PHD_FILE: MSMg01no082_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:29 2005
         (244 letters)



>mm_chr12_99307245_99307888
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaatgattggtatgtctttggctcatcacaatggaccccttcagaaagctctccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaatgattggtatgtctttggctcatcacaatggaccccttcagaaagctctccagc 260

                                                                       
Query: 61  cactggaatctattccgatgaggtgatggggtggcggtgtgcttgtgaggggtggaattc 120
           ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 261 cactggaatctattctgatgaggtgatggggtggcggtgtgggtgtgaggggtggaattc 320

                                                                       
Query: 121 cagacagtttcaacatgggaaccgattaccagaagaccaagtgccacttagagacaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacagtttcaacatgggaaccgattaccagaagaccaagtgccacttagagacaggag 380

                                                                       
Query: 181 ctttttgtaccagcctggccttagggaggggagttaagactggaagttggtttatcaaaa 240
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 381 ctttttgtaccagcctggccttagggagggaagttaagactggaagttgggttattaaaa 440

               
Query: 241 gttc 244
           ||||
Sbjct: 441 gttc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)