BAC Information

Click to search

BAC

Clone NameMSMg01-083A19
Chromosome12 (Build37)
Map Location 119,286,427 - 119,286,976
singlet/doubletsinglet
Overlap geneDnahc11
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l
Downstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083A19.T7 (MSMg01no083_a19.b1)MSMg01-083A19.TJ (MSMg01no083_a19.g1)
ACCAG303274AG303275
length747688
length of high quality
(start - end)
---550 (73 - 622)
definitionCHROMAT_FILE: MSMg01no083_a19.b1 PHD_FILE: MSMg01no083_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:40 2005CHROMAT_FILE: MSMg01no083_a19.g1 PHD_FILE: MSMg01no083_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGGGGCGCTATACGACTACTATATCGAGAGGATGCGNGGAATTN
CTTTATTTACCGATTTCTTATACAGATGGGAAACTTGCTTTGCGACCTTG
GCACTTCATTAATGAAGCTATTGCTCACCATGTTTAATGCCATTATGAAA
GTATAACGAACAGCTGCTTATAAGGTTGCAAGTCACCCTAANTAAGTGCC
CCTTTTCCTTCCTCTTTACCAAACCGCCCACATGCACATTGAACCCCCCC
ATGACATTCTGACCACCACTATGCCATCTACCTCTGGAAACACTCACCCG
CTCCACAACGCTCCTTTTCCTCCTTTTCAACGCCCCCGCCCACCCTCCAC
CTTCCTCTCCCCACCCCCCGACCCCTCCCCCCCCCCTCCCCCCCCACTCT
CGCCCTGCCTCTCACACTTTGCCCCGACCCCTCACCCCACCCCCCCCCCC
CCCCCTCTCCCCTTCCCCATCCCCGCTCCACCCCCTAACCCCCCCCCTTC
TCCCCGCACCCCCCCCTCTGCCCTCCCCTCCTCCCCCCTCCACCCCCCCC
CTCTCCGCCCCACCACCCCCCCCCCCCCCCCACCATCACCCCCCCCCTTC
CCCCCCCCTCCCCCCCCCGCTCCCCTCCTACCCCTCCCCCCCCCATCCCC
CCGCCTCCCCCCTCTACCTCCACCTCCGACATCCCCCTCCCCTCCTCCCC
CCCCCCCTATGCTCCCCCCTATACCCCCCCCCCCCCCGTGACCCCGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAGTGACTGACTCCGTAACAGGATCT
CACTATGTATCTCTGGCTATCCTGAAATTTGCTACAGAGACCAGGCTGGC
CTTGAACTCACAGAGATAGTGCCTCTGCTGGGATTAAACATGTTCACCAC
CAGTCTTGGCTCCAAAACAACTGATTTGGGCTGCCTGGCATTCCCTCTCT
TGTCCTCCTATCTACCATCCTCAAGGCAACAATTCTCCTAAATGTTTCTC
AGCTGTGCCTACAGGCAGGTCACCTCTCCTCCAAGCCTCAGCAGCTGTAG
AGAGGCAGACAGAGTAGCCATCTACTTTACAGATGGATGTGGGGGTAAAG
TTGTTCATGTGGGAATGAATGCTTTGTGAACACTGAAATGATAAATACAT
GAATATGCCATTTCATCCATTTGTGGATAATAAAACCAAATTAGGTCTTG
GCTGCCGTTTCTGTTGGTAATAAAAGAAGAGAAGAACGGAAGTAAAAACA
CCCATGTGTCATGCCGATAATAAAGGTAAGGGGTGCATGGAGAACGTTTT
CGTTCAGGTGTGTATCTGTGGGAGTTTGGGGGCTACTAAGACCCCCCACA
TGGTCTCATGAAAAGTCTTGGCATGAAAATTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_a19.g1 MSMg01no083_a19.g1 CHROMAT_FILE:
MSMg01no083_a19.g1 PHD_FILE: MSMg01no083_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:40 2005
         (550 letters)



>mm_chr12_119286227_119287176
          Length = 950

 Score = 1056 bits (546), Expect = 0.0
 Identities = 549/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagtgactgactccgtaacaggatctcactatgtatctctggctatcctgaaatttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtgactgactccgtaacaggatctcactatgtatctctggctatcctgaaatttgc 260

                                                                       
Query: 61  tacagagaccaggctggccttgaactcacagagatagtgcctctgctgggattaaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagagaccaggctggccttgaactcacagagatagtgcctctgctgggattaaacatg 320

                                                                       
Query: 121 ttcaccaccagtcttggctccaaaacaactgatttgggctgcctggcattccctctcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaccaccagtcttggctccaaaacaactgatttgggctgcctggcattccctctcttg 380

                                                                       
Query: 181 tcctcctatctaccatcctcaaggcaacaattctcctaaatgtttctcagctgtgcctac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacctatctaccatcctcaaggcaacaattctcctaaatgtttctcagctgtgcctac 440

                                                                       
Query: 241 aggcaggtcacctctcctccaagcctcagcagctgtagagaggcagacagagtagccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaggtcacctctcctccaagcctcagcagctgtagagaggcagacagagtagccatc 500

                                                                       
Query: 301 tactttacagatggatgtgggggtaaagttgttcatgtgggaatgaatgctttgtgaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactttacagatggatgtgggggtaaagttgttcatgtgggaatgaatgctttgtgaaca 560

                                                                       
Query: 361 ctgaaatgataaatacatgaatatgccatttcatccatttgtggataataaaaccaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaatgataaatacatgaatatgccatttcatccatttgtggataataaaaccaaatt 620

                                                                       
Query: 421 aggtcttggctgccgtttctgttggtaataaaagaagagaagaacggaagtaaaaacacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtcttggctgccgtttctgttggtaataaaagaagagaagaacggaagtaaaaacacc 680

                                                                       
Query: 481 catgtgtcatgccgataataaaggtaaggggtgcatggagaacgttttcgttcaggtgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgtgtcatgccgataataaaggtaaggggtgcatggagaacgttttcgttcaggtgtg 740

                     
Query: 541 tatctgtggg 550
           ||||||||||
Sbjct: 741 tatctgtggg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)