ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGAGAGATCCGCGGAAT
TCTAATGCCACAAGGCATCTGGAAGAGAGAGTCACTGGGTCTGACTTGAC
CATTTGAAACTGCAAAGCCCACCCTGAGCAACACATTTCCTTCAACAAGG
TCACATCTACTCCAATAAGTTCACACCTACTAATAGTGACACTTCCTTGT
TACCAAACATTTAAATCAATGAGTCTATTTTTATTCAAACTAACCCAATT
TTTAATTTTGAAGAGACCTTGTAACTTGCATTGTGTCTCATATCACCTTT
GCTCTGAGGATAACTAAAGGCTATATATTTAAAGTTTTATCTGCTTATAT
AATCCATGTTCTTGATGATTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTT
TGCTTTTGGTTCCTCCTTAACTGATTTCTCCGGGCATTTGTTGAGTTTTA
ACTGTTCATATTATAGCTCTAATTGAGTACATGGGTTTGTGTTTCTCTGT
GTAGTCTGACTTGACATTTTTTCCTTGGACTTTTTCTTTGAATCGGTTTT
CCAGCATTTGTAGGGCTATGAAAGCCTGGTTTTTAAAATTATAAAAAATA
GGCATGAGGGCTGAAGGTCTCAGTATTCTGCATTAAGCACTTAAAATGCA
TCCGATGCCTTATTTTCCCCTTTAACAGTGGTTCCCTATTCTGAAAGATG

TGCAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTATACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCGTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTTCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAATCTAGGATACCCAAGATATAAGATACAATTTCCTAAAC
ACAN

Query= MSMg01no083_f01.b1 MSMg01no083_f01.b1 CHROMAT_FILE:
MSMg01no083_f01.b1 PHD_FILE: MSMg01no083_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:00 2005
         (557 letters)



>mm_chr12_46425321_46426277
          Length = 957

 Score = 1015 bits (525), Expect = 0.0
 Identities = 547/557 (98%), Gaps = 6/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatctggaagagagagtcactgggtctgacttgaccatttgaaactgcaaagcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aggcatctggaagagagagtcactgggtctgacttgaccatttgaaactgcaaagcccac 265

                                                                       
Query: 61  cctgagcaacacatttccttcaacaaggtcacatctactccaataagttcacacctacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctgagcaacacatttccttcaacaaggtcacatctactccaataagttcacacctacta 325

                                                                       
Query: 121 atagtgacacttccttgttaccaaacatttaaatcaatgagtctatttttattcaaacta 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atagtgacacttccttgtcaccaaacatttaaatcaatgagtctatttttattcaaacta 385

                                                                       
Query: 181 acccaatttttaattttgaagagaccttgtaacttgcattgtgtctcatatcacctttgc 240
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 386 acccaatttttaattttga-----ccttgtaacttgcattgtgtctcatatcacctttgc 440

                                                                       
Query: 241 tctgaggataactaaaggctatatatttaaagttttatctgcttatataatccatgttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgaggataactaaaggctatatatttaaagttttatctgcttatataatccatgttct 500

                                                                       
Query: 301 tgatgatttttctctttttttttttttttttttttttttgcttttggttcctccttaact 360
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 501 tgatgatttttctctttttttttttttttttttttttt-gcttttgtttcctccttaact 559

                                                                       
Query: 361 gatttctccgggcatttgttgagttttaactgttcatattatagctctaattgagtacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gatttctccgggcatttgttgagttttaactgttcatattatagctctaattgagtacat 619

                                                                       
Query: 421 gggtttgtgtttctctgtgtagtctgacttgacattttttccttggactttttctttgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 gggtttgtgtttctctgtgtagtctgacttgacattttttccttgtactttttctttgaa 679

                                                                       
Query: 481 tcggttttccagcatttgtagggctatgaaagcctggtttttaaaattataaaaaatagg 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 tcggttttccagcatttgtagggctatgaaagcctggtttttagaattataaaaaatagg 739

                            
Query: 541 catgagggctgaaggtc 557
           |||||||||||||||||
Sbjct: 740 catgagggctgaaggtc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)