BAC Information

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BAC

Clone NameMSMg01-083G20
Chromosome12 (Build37)
Map Location 116,566,783 - 116,566,931
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58
Downstream geneEG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083G20.T7 (MSMg01no083_g20.b1)MSMg01-083G20.TJ (MSMg01no083_g20.g1)
ACCAG303553AG303554
length764706
length of high quality
(start - end)
149 (68 - 216)479 (70 - 548)
definitionCHROMAT_FILE: MSMg01no083_g20.b1 PHD_FILE: MSMg01no083_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:09 2005CHROMAT_FILE: MSMg01no083_g20.g1 PHD_FILE: MSMg01no083_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCACATCTCCTGAACAGTGAAAGAACTGCCCACTTCCTCCAGCATAC
GTGTTTACTGCTGACTAAAAACAGAAAGAGGGTACTAACCTAACATGTGC
CTTGCTTCCCCTTACAAAAATCAGGGCAATCTTTGAGTATCTGGTGGAGA
TGGAGGAGGAGGTTGTTTCCATTATTCTCCCCTCTTCCTCTTTCCTTCTC
TTTCCTCTCTTCTTCTTCTCCTTCTTCTTTTCTTTTTTTTCCTTCCTTCT
TTTCCTCTCTCATTCCCGTTTTTTTTTCCTTTCTCGTTTTCCTTCCCCCC
TTTTCTCCCCTTATTTCTTTCTCTTTTTCTTCCTTTACCCTCTCTTTTTC
CTTTTTTTTTGTTTTTCTTTCCCCCCCTTCTTTTTCCCCCCATTCCTTTT
TCTTTTCTCCCCCTCTCCCCTTTCTTCTATCTTTTTTTTTTTTCCCTCCT
CCTCTCTTCTCCTCTTCTCCTCTTTCCCTCTTTTTTCCTATTGCCTTTGT
CTTTTTTCTTTCTTACACTCCCCTCTATTCTTCCTTCTTCTTCTCCTCCT
TTCCCTTCCCCCTTCTCATTATCCCTTTTCTTCCTTTTACTTTTTTCCCC
CTTTTTCTTCCTTTCCTTCTCCTATCTTCTTTTCTCTCCTATCCCCTCTC
CCTTGTTGTTCCCCCTGTTTTTCCTTTTTATTTTTTTCCCCTGTTCCCTT
CCCCTCCTTTTCTN
AATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGATGGAATCATGGGAGGGACACATCTGTG
CTCAAGACTCAGTGTTTTCTTGCTGCCCTCAGTTGCTCTGGCCCAAGTAC
TGTCTGATGTAGGCAACAAAGACCCTGATCGCTCTTGTTTACACCTTATT
AAAAATGGAAACTGCTAGAGCTGTATCCATCTATCATTAGGAAAGAGGAT
GACACTGAGGACATCAGTGATGATAATAAAGAAACAACTTAAATTCAGAT
GCTGAGACACCAGTCATCTTCAAGAGATAAAGAAGAGCCATTTTTCCCTG
TGGCTAAACCCTGTAAGCACCCTCTTTGCAGGGATATGTTACTATTCAAT
TCAGACTGGATAATTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCC
CCACTCCCCTATCCACCCACTCCCTCTTTTTGGCCCTGGCGTTCCCCTGT
TCTGGGGCAAATAAATTTTTGCGTGCCCAATGAGCCTCTCTTTCCAGTGA
TGTTCGACTAGTCCACCTTTTGATACAAATGCTGCTAGAGTCAAGAGCTC
CGGCGTACTGGTTATTTCTACTGTTGCTCCACCTTTAGGGTTCCAAATTC
TTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_g20.b1 MSMg01no083_g20.b1 CHROMAT_FILE:
MSMg01no083_g20.b1 PHD_FILE: MSMg01no083_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:09 2005
         (149 letters)



>mm_chr12_116566583_116567131
          Length = 549

 Score =  288 bits (149), Expect = 9e-83
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgaaagaactgcccacttcctccagcatacgtgtttactgctgactaaaaacagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgaaagaactgcccacttcctccagcatacgtgtttactgctgactaaaaacagaaa 260

                                                                       
Query: 61  gagggtactaacctaacatgtgccttgcttccccttacaaaaatcagggcaatctttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggtactaacctaacatgtgccttgcttccccttacaaaaatcagggcaatctttgag 320

                                        
Query: 121 tatctggtggagatggaggaggaggttgt 149
           |||||||||||||||||||||||||||||
Sbjct: 321 tatctggtggagatggaggaggaggttgt 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)