BAC Information

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BAC

Clone NameMSMg01-084B11
Chromosome12 (Build37)
Map Location 114,356,038 - 114,440,901
singlet/doubletdoublet
Overlap geneMta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Upstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22
Downstream geneIgh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084B11.T7 (MSMg01no084_b11.b1)MSMg01-084B11.TJ (MSMg01no084_b11.g1)
ACCAG304042AG304043
length698700
length of high quality
(start - end)		479 (43 - 521)396 (71 - 466)
definitionCHROMAT_FILE: MSMg01no084_b11.b1 PHD_FILE: MSMg01no084_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:01 2005CHROMAT_FILE: MSMg01no084_b11.g1 PHD_FILE: MSMg01no084_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,356,038 - 114,356,512)(114,440,509 - 114,440,901)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGAGATCGCCCTCTGACACTTTAGCTTGGTGAAGGGCTCAAGACCC
AGTCATATAGCACACAGGCACGCACGCACACATGAGCGCACATACACAAG
CAGACACATGCATGTTGATTGTCCCCATTCCTAACGGGTGGGGGTAGGGT
TGTAGAAGCCAGCATCTCTTTGTGGTGGCAGCCGGCCAAATGGGGACTCT
AGAAACCTACCTTAAGCAGGAGTGCTTGAGAGGCAGGTGTCCAGAACTGG
CTGTCCTCCTCAGCTCTGGGACTGGGTTAGGGAGGGGTGAGAAGGACTAG
GGCCGACTTTAGAGCAGGGCTGGCGTTTGGCGAAGTCCCTGTCATCCTAT
AGGCAGCCCCGGGGCACTCTCACTAGCACAGCATTTTGAGCCTTTCATTT
CATTTCCAAAATGAAAATGCAGTTCCTAGCTTAGACCAGGTCCCGTGTTT
AGGACTGCTTTTTGGATACAAAGTTGTGCTCCTTGACCTCTGACCTCAAA
GCTCATACTCTGTCCTCTAGTTGCACGTGCCCGATGCTCCTGCCCCGTGT
ATGTTTGACATTATGACCCATTTGTAGCCCTATAGGTGTGACACCCATGC
CTCCTGTAATGCTGGTGCCATTTTGCGTCCCCATTGCGTATGGTGTAG

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCATGTAGAGCGGGCTGGCCTCAATCCAC
TCAGATCCTCCTGCCTCTGCCTCCTGCGTGTTGCGATTGCAGGCTTGTGC
CGCCACCACACTGGCACGTGATAGATTTTTAATTGGTGCTCAGAATAAAA
TAAACAAAATGCCACAATGTGGAGACTCTTAATAAGATACATGGCAAAAA
GTAAAACTAAAAAAATAGACATTTCGTAAATACATATAGATTTAATGAAA
GTAGCCAAGCATTGTGGCACATGTCTGAAGTTCTACTTCAGGATGTAGAT
GTAGGACTGCTGCAAGTTTGAGTCCAACCAAAGAGGTGATGTGAGACTCA
GTCTCCCCCAAAAAACTTTAAATTAAAAACTAGTAAGTAAAATTGTATAG
AAAGAAAACCTAATACAAAAAACACAACAGTAGTACTCAGGTTACTCTGC
GGGTGCAGTGGAAGGTGCCTGCTCACATAGCGATTGCAGCGTTAGTGGCC
TGCTCACACAGTGAGTGCATTGGGAGGTGCCTGCTCACACAGGCTCAACT
CTTGTTTTGTTTGGTGAGAGTGCATGTGCCTGTTATAATTATAAAAAGCA
GCAATTTATATATGCATAGCTTCCTGTCCATCAGTGCCACGGTATATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_b11.b1 MSMg01no084_b11.b1 CHROMAT_FILE:
MSMg01no084_b11.b1 PHD_FILE: MSMg01no084_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:01 2005
         (479 letters)



>mm_chr12_114355834_114356712
          Length = 879

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgagatcgccctctgacactttagcttggtgaagggctcaagacccagtcat 64
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgagagcggtctctgacactttagcttggtgaagggctcaagacccagtcat 264

                                                                       
Query: 65  atagcacacaggcacgcacgcacacatgagcgcacatacacaagcagacacatgcatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagcacacaggcacgcacgcacacatgagcgcacatacacaagcagacacatgcatgtt 324

                                                                       
Query: 125 gattgtccccattcctaacgggtgggggtagggttgtagaagccagcatctctttgtggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattgtccccattcctaacgggtgggggtagggttgtagaagccagcatctctttgtggt 384

                                                                       
Query: 185 ggcagccggccaaatggggactctagaaacctaccttaagcaggagtgcttgagaggcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagccggccaaatggggactctagaaacctaccttaagcaggagtgcttgagaggcag 444

                                                                       
Query: 245 gtgtccagaactggctgtcctcctcagctctgggactgggttagggaggggtgagaagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtccagaactggctgtcctcctcagctctgggactgggttagggaggggtgagaagga 504

                                                                       
Query: 305 ctagggccgactttagagcagggctggcgtttggcgaagtccctgtcatcctataggcag 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 ctagggccgactttagagcagggctggcgtttggtgaagtccctgtcatcctataggcag 564

                                                                       
Query: 365 ccccggggcactctcactagcacagcattttgagcctttcatttcatttccaaaatgaaa 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccgggggactctcactagcacagcattttgagcctttcatttcatttccaaaatgaaa 624

                                                                  
Query: 425 atgcagttcctagcttagaccaggtcccgtgtttaggactgctttttggatacaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgcagttcctagcttagaccaggtcccgtgtttaggactgctttttggatacaa 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_b11.g1 MSMg01no084_b11.g1 CHROMAT_FILE:
MSMg01no084_b11.g1 PHD_FILE: MSMg01no084_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:01 2005
         (396 letters)



>mm_chr12_114440384_114441179
          Length = 796

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgtagagcgggctggcctcaatccactcagatcctcctgcctctgcctcctgcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 accatgtagagcgggctggcctcaatccactcagatcctcctgcctctgcctcctgcgtg 459

                                                                       
Query: 61  ttgcgattgcaggcttgtgccgccaccacactggcacgtgatagatttttaattggtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttgcgattgcaggcttgtgccgccaccacactggcacgtgatagatttttaattggtgct 399

                                                                       
Query: 121 cagaataaaataaacaaaatgccacaatgtggagactcttaataagatacatggcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagaataaaataaacaaaatgccacaatgtggagactcttaataagatacatggcaaaaa 339

                                                                       
Query: 181 gtaaaactaaaaaaatagacatttcgtaaatacatatagatttaatgaaagtagccaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtaaaactaaaaaaatagacatttcgtaaatacatatagatttaatgaaagtagccaagc 279

                                                                       
Query: 241 attgtggcacatgtctgaagttctacttcaggatgtagatgtaggactgctgcaagtttg 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 278 attgtggcacatgtctgaagttctacttcaggaggtagatgtaggactgctgcaagtttg 219

                                                                       
Query: 301 agtccaaccaaagaggtgatgtgagactcagtctcccccaaaaaactttaaattaaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 218 agtccaaccaaagaggtgatgtgagactcagtctcccccaaaaaattttaaattaaaaac 159

                                            
Query: 361 tagtaagtaaaattgtatagaaagaaaacctaa 393
           |||||||||||||||||||||||||||||||||
Sbjct: 158 tagtaagtaaaattgtatagaaagaaaacctaa 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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