BAC Information

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BAC

Clone NameMSMg01-084K23
Chromosome12 (Build37)
Map Location 17,408,581 - 17,408,837
singlet/doubletsinglet
Overlap geneNol10
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2
Downstream geneLOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084K23.T7 (MSMg01no084_k23.b1)MSMg01-084K23.TJ (MSMg01no084_k23.g1)
ACCAG304471AG304472
length728722
length of high quality
(start - end)
262 (45 - 306)185 (85 - 269)
definitionCHROMAT_FILE: MSMg01no084_k23.b1 PHD_FILE: MSMg01no084_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:47 2005CHROMAT_FILE: MSMg01no084_k23.g1 PHD_FILE: MSMg01no084_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATATTTGCGTGCGCTNTACAACTCACTATATTCAGAAGATCCGCGGA
ATTCTAGTACTGTTTCCGAGTGAGGAACATGATAAATAAATGGATAGAAG
TTACTATAAGTATCTGAATTCCTTGTCTCTATTTTGATAGTTGTGATGTA
ACAGCTTAGTACCTTTGTATCTTTCCCCTTTCCAGCCTAAATTCTTCTAC
TTTGTTTATTCCCTTTCCATTGTATTCTCTGCCATGTTTACACATATTGT
AGCTCTTTCCTCTGGCTGAATGGAATACTTGCAACCATTGTTAAAGAATT
TTGGCTGCTAAGTGAGTGGTGTTTGACCTTTTAATGTCTCCTCCCAGGTT
TTGGGTCCTGCTCCCAGGTGGTGTTCCTTCCTGGACAACTTGACATAAGA
ATTATAAGATAATCCATAGATCACAGTGTATGATGATTACAAATTTGTCA
CCAATAAAGACCTTGAAAATTTAAGTAAAATGTGACAAAATGTTTATGAT
ATTGTCTTATTATTTCCATTTGAGAGATTTTGAACATTAGAATCATCTGA
GCCATTTTTATCTGATCTTTCCAAATGTCTCGTTTCTGCCTCATCTAATA
TATAAGAGTTCTAATCTTAATATCCTCTGCTCATAATATCTTTGTAAAAT
CCAATCGCCCTGACCCCTTCATGCTTTTACTGTCACAGACTCCTTTTCAT
AACCGACTTCCTGTTCACGTACATTTCG
CAATGATGTGTTAGGCTGGTGCCGCCTGCTTCCGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCTCCAAGAAAACACTGATAGGTATCCA
ATCAAATAAATTGACACTTTCTCCCTATCATCAATGACTCATTTTGTTCG
AACAAGTCTGCATGGCAGTGTGTGTGTGTGCGTGTGTTGTGTGAGTGTGT
CTGTAGTGTGTGTGTGTGTGTCCTACACATCAACCCCACCAAAGTCTATA
ATGTTGTCTCACCTGAGAAAGTATCTGTCTTGTCTTCTCTATATATGTGT
TAGTCCAGCTTTGCAATGTTTTATTTAAAATAAGGATAGCTGTATCCACA
AAGAGTAATATTATGATGTTCTCCAGAGGGTCTGCTCCCCTCCCCACTAC
AATATATTGTCAACACTAATCTGCCACTATTTAAAGGATTATAGCATTTT
CCCGTGAGTTTCAACGTGAATAACCTACAGTTTTTATGGACAGGGAAATG
GAAACTCTCTTCTCATAGTATTATAAGCAAATTCTCTGTATATGGGTAGG
AAATTTTGAGTGAATATACATGAATATAAATATCTCTATCTGTTAATATT
CTGTTATCTTTTATTTAAAGTCAAAATTTGAATTATTTGATTTTGAATTT
TTTATTCTTCTATATATTGTTGTTTATATCCATTTTATTTATTATATTTT
TTTATATTAACTATCTCAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_k23.b1 MSMg01no084_k23.b1 CHROMAT_FILE:
MSMg01no084_k23.b1 PHD_FILE: MSMg01no084_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:47 2005
         (262 letters)



>mm_chr12_17408377_17409037
          Length = 661

 Score =  453 bits (234), Expect = e-132
 Identities = 252/258 (97%), Gaps = 1/258 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagtactgtttccgagtgaggaacatgataaataaatggatagaagttactata 64
           |||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtactgttt-tgagtgagggacatgataaataaatggatagaagttactata 263

                                                                       
Query: 65  agtatctgaattccttgtctctattttgatagttgtgatgtaacagcttagtacctttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtatctgaattccttgtctctattttgatagttgtgatgtaacagcttagtacctttgt 323

                                                                       
Query: 125 atctttcccctttccagcctaaattcttctactttgtttattccctttccattgtattct 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 atctttcccctttccagcctaaattcttttactttgtttattccctttccattgtattct 383

                                                                       
Query: 185 ctgccatgtttacacatattgtagctctttcctctggctgaatggaatacttgcaaccat 244
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 ctgtcatgtttacacatattgtagctctttcctctggttgaatggaatacttgcaaccat 443

                             
Query: 245 tgttaaagaattttggct 262
           ||||||||||||||||||
Sbjct: 444 tgttaaagaattttggct 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 661
Length adjustment: 9
Effective length of query: 253
Effective length of database: 652
Effective search space:   164956
Effective search space used:   164956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)