BAC Information

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BAC

Clone NameMSMg01-084L15
Chromosome12 (Build37)
Map Location 25,864,870 - 25,865,146
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L15.T7 (MSMg01no084_l15.b1)MSMg01-084L15.TJ (MSMg01no084_l15.g1)
ACCAG304500AG304501
length721725
length of high quality
(start - end)
---282 (58 - 339)
definitionCHROMAT_FILE: MSMg01no084_l15.b1 PHD_FILE: MSMg01no084_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:50 2005CHROMAT_FILE: MSMg01no084_l15.g1 PHD_FILE: MSMg01no084_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCCGAATTCAGGACTGCAACAGCCTGAAGGCTGACAGCCCA
TGTCTCTCTATCCCAGCCTGTGTTTTGGTGGTTTCGTGACTGCTGTGGCC
TTCCTGAGCCCTGCACTATGTCATCTAGCAGAAGAACACACCGTCTGTTG
CCTTTGTCCCGGTTGCTATGAGGATTCTGCAGGTGAACTGTGATCTCCCC
GGAGCTCTTTGCAGGAATCCTCTGAGGAGATCTGACCTCTGCCTTGTTCT
GAGCTCTTGGAGCTTCCCACAAGAGATTAATGCTTTAGAGTTGACATGGC
CTTCCTAGCTCAGCTGGCTCCTTTATTTTACAGAGATGTTTTCATAGAGT
GTCTTGTGGACACCCGACGCTCCCTGATGTGCCACCAGGGAGAACTATTG
TTATAAAATTACTAGCACAGGACACTCTTGCCTGCTTGCTCGGCTATGTC
CTGCTGCTGTGTGCCATGATTAGTATACAATAGGCTCCTTGGTCAGCAGC
CCAGCGCTCTCTCGCAATCATTATGGATGCTCACTGTACGTTTTTGTGCT
TGTACAGCCCCGATGAGTAATGACATTTTCCTTTTTAATGGCCCTGCTGG
TGACTTATTATTGCTTTAGAACTTCTATTCCACGAATTACTCTATGCGTC
TTGGTAGACCACGCGTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l15.g1 MSMg01no084_l15.g1 CHROMAT_FILE:
MSMg01no084_l15.g1 PHD_FILE: MSMg01no084_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:50 2005
         (282 letters)



>mm_chr12_25864665_25865346
          Length = 682

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaggactgcaacagcctgaaggctgacagcccatgtctctctatcccagcctgtg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaggactgcaacagcctgaaggctgacagcccatgtctctctatcccagcctgtg 265

                                                                       
Query: 66  ttttggtggtttcgtgactgctgtggccttcctgagccctgcactatgtcatctagcaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttggtggtttcgtgactgctgtggccttcctgagccctgcactatgtcatctagcaga 325

                                                                       
Query: 126 agaacacaccgtctgttgcctttgtcccggttgctatgaggattctgcaggtgaactgtg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaacacaccgtctgttgcctttgtcccggttgctatgaggattctgcaggtgaactgtg 385

                                                                       
Query: 186 atctccccggagctctttgcaggaatcctctgaggagatctgacctctgccttgttctga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atctccccggagctctttgcaggaatcctctgaggagatctgacctctgccttgttctga 445

                                                
Query: 246 gctcttggagcttcccacaagagattaatgctttaga 282
           ||||||||| ||||||||||||||||| |||||||||
Sbjct: 446 gctcttggaacttcccacaagagattagtgctttaga 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)