BAC Information

Click to search

BAC

Clone NameMSMg01-084N21
Chromosome12 (Build37)
Map Location 39,949,751 - 39,950,071
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N21.T7 (MSMg01no084_n21.b1)MSMg01-084N21.TJ (MSMg01no084_n21.g1)
ACCAG304604AG304605
length723727
length of high quality
(start - end)
543 (37 - 579)468 (66 - 533)
definitionCHROMAT_FILE: MSMg01no084_n21.b1 PHD_FILE: MSMg01no084_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:00 2005CHROMAT_FILE: MSMg01no084_n21.g1 PHD_FILE: MSMg01no084_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAA
ATCACCAACGCTGTTGCTAACATTAGAGTTTGCTCTCCTCAAACTATCAG
CATGGCCCTATTCCTGAAGACAATGCCTACACAACTCATTGAACATAGAG
AAGCTGAGCTGTGTCTTCATCTCTACAGTCTAGGGTTCTCGGTATGCTTC
CAAAAGAGAAATGTAAACTTCAACCCAACTTCAATCCCTTTGATCTACAA
TGTTGTTCTGCTGACATGATATGCCAATGCAATGGTGGCACAAAGCTTGT
GTAAGTAAATAACCAATGTCTGATTTGACTTAAGGCCCATTTGGCCAGAT
GGAACCCATACTTTATGATGGTTCAGTGACCAAGAAACAGAGACTTGGTA
GTCCAGGACCTAGGGTAAAACCAATACTGTTCTTAAAACACACAAAACAA
GACAAAAAGCAAAAATGCCAAAAAAATGTAGCAATTGAATAACTCATAAT
GACATTATGGTATTCTCATAATTCAACTATACCTTGCTCAGCCCTCAGCA
GAGAGTGTTCCTTCTGCAGAAGATGAGAACAAATACTGAGATCAATGCCC
TGACATGATGCAAACATCAGAACATTTCAGCCATAAGGCGATGAACACTT
TAGCAAGTAGTGCTGCAGTATAGTAGTAGGGGTTCTTGTGAAGACTGTAA
AGAATGTGTCAGTGGAGAAGCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCATGATAAGTATTTTTGGTATGATTTTAGAAA
TAGAAAATTAAAGCCTATCCAATATCAGAAATAAATTTTGCAGGTGTCTA
TTTTGTAACTGGCAGTTAATAGTCAGAAAATGATAGAACTATTTTTATTA
ATATGTATCATTAATAATTTTGTTCATAAATTAAAATAAAATTTTAAAGC
AGAGACTTGGCATTTTAGTTTTTCTTCCCTTTCAGGTTTTAAATATAAAT
TTTAATAATATTTTGTTTTAGAATACCTTCTGAAATGTTTTACTCTTTTA
CTGTATTTTTTCTCACTTGATTAGAAATCATATTTGTTATAGTTATATGC
ATTCTATTTAAATTACTTGTTTATACTTATTTTATTTATTTATTTTACTT
ATATTTATTTTTCTTATATTTACTTATTCTGCTTGTGTTCATTTATTTAT
GTATAACTCTGACCTGATTTTTTTCTTTTTAATTGGCAAATAAAATGAAC
GTAATTTTTTGCTCAACCTGACATAATATATTTGTATGAATGTATCATGT
ATATATATATATATATATATATATATATATATATATATATGTCTGTAACC
ATTTATTATTCCCTCATCCCCGCCCTGTTCTCCTCTCCTCCCTTATTTCT
TTCCTCTTTTTCTCCTTTTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n21.g1 MSMg01no084_n21.g1 CHROMAT_FILE:
MSMg01no084_n21.g1 PHD_FILE: MSMg01no084_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:01 2005
         (468 letters)



>mm_chr12_39949751_39950618
          Length = 868

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatgataagtatttttggtatgattttagaaatagaaaattaaagcctatccaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tttcatgataagtatttttggtatgattttagaaatagaaaattaaagcctatccaattt 262

                                                                       
Query: 61  cagaaataaattttgcaggtgtctattttgtaactggcagttaatagtcagaaaatgata 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaataaattttgcaggagtctattttgtaactggcagttaatagtcagaaaatgata 202

                                                                       
Query: 121 gaactatttttattaatatgtatcattaataattttgttcataaattaaaataaaatttt 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ggactatttttattaatatgtatcattaataattttgttcataaattaaaatgaaatttt 142

                                                                       
Query: 181 aaagcagagacttggcattttagtttttcttccctttcaggttttaaatataaattttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaagcagagacttggcattttagtttttcttccctttcaggttttaaatataaattttaa 82

                                                                       
Query: 241 taatattttgttttagaataccttctgaaatgttttactcttttactgtattttttctca 300
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 81  taatattttgttttagaatacattctgagatgttttactcttttactgtattttttctca 22

                                
Query: 301 cttgattagaaatcatatttg 321
           |||||||||||||||||||||
Sbjct: 21  cttgattagaaatcatatttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)