MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085M11
Chromosome	12 (Build37)
Map Location	72,727,455 - 72,727,635
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
Downstream gene	Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100041061 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Frmd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319710 MGI:2442579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Actr10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56444 MGI:1891654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psma3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19167 MGI:104883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3110056K07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73204 MGI:1920454
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs

name	Arid4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238247 MGI:2444354
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timm9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30056 MGI:1353436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC100041035 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs

name	2700049A03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76967 MGI:1924217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 108 ESTs, 1 Protein

name	LOC666162 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Dact1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59036 MGI:1891740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041190 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Daam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC666213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 13 ESTs, 7 Proteins pseudo : _no_value

name	LOC666220 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Gpr135 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238252 MGI:2676315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041239 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	2810055F11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67217 MGI:1914467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1200003C05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104771 MGI:1915057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930403N07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73936 MGI:1921186
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 1 Protein

name	Rtn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104001 MGI:1933947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lrrc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78257 MGI:1925507
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810048J11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC209183 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:209183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100041323 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100041061 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263290 GeneID:100041061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041061 transcript_id : XM_001475657.1

name	Frmd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328509 GeneID:319710 MGI:2442579
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FERM domain containing 6 transcript_id : NM_028127.3

name	Actr10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9789886 GeneID:56444 MGI:1891654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ARP10 actin-related protein 10 homolog (S. cerevisiae) transcript_id : NM_019785.1

name	Psma3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385658 GeneID:19167 MGI:104883
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) subunit, alpha type 3 transcript_id : NM_011184.3

name	3110056K07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263287 GeneID:73204 MGI:1920454
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs product : RIKEN cDNA 3110056K07 gene transcript_id : XM_898262.3

name	Arid4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487104 GeneID:238247 MGI:2444354
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT rich interactive domain 4A (Rbp1 like) transcript_id : NM_001081195.1

name	Timm9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67846098 GeneID:30056 MGI:1353436
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translocase of inner mitochondrial membrane 9 homolog (yeast) transcript_id : NM_001024854.1

name	Timm9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67846097 GeneID:30056 MGI:1353436
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translocase of inner mitochondrial membrane 9 homolog (yeast) transcript_id : NM_013896.3

name	Timm9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67846108 GeneID:30056 MGI:1353436
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translocase of inner mitochondrial membrane 9 homolog (yeast) transcript_id : NM_001024853.1

name	LOC100041035 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263288 GeneID:100041035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs product : hypothetical protein LOC100041035 transcript_id : XM_001475684.1

name	2700049A03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392886 GeneID:76967 MGI:1924217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 108 ESTs product : RIKEN cDNA 2700049A03 gene transcript_id : XM_126944.6

name	Dact1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130441 GeneID:59036 MGI:1891740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dapper homolog 1, antagonist of beta-catenin (xenopus) transcript_id : NM_021532.3

name	LOC100041190 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263297 GeneID:100041190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100041190 transcript_id : XM_001475955.1

name	Daam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78191776 GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 1 transcript_id : NM_026102.2

name	Daam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78191778 GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 1 transcript_id : NM_172464.2

name	Gpr135 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32306523 GeneID:238252 MGI:2676315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 135 transcript_id : NM_181752.1

name	LOC100041239 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263300 GeneID:100041239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041239 transcript_id : XM_001476062.1

name	2810055F11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803478 GeneID:67217 MGI:1914467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810055F11 gene transcript_id : NM_026038.2

name	1200003C05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312773 GeneID:104771 MGI:1915057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200003C05 gene transcript_id : NM_024205.1

name	4930403N07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263293 GeneID:73936 MGI:1921186
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 1 Protein product : RIKEN cDNA 4930403N07 gene transcript_id : XM_982478.2

name	Rtn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090142 GeneID:104001 MGI:1933947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 1 transcript_id : NM_153457.6

name	Rtn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090140 GeneID:104001 MGI:1933947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 1 transcript_id : NM_001007596.1

name	Lrrc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353356 GeneID:78257 MGI:1925507
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 9 transcript_id : NM_030070.2

name	1810048J11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430538 GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810048J11 gene transcript_id : NM_026327.3

name	LOC100041061 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263291 GeneID:100041061
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475707.1

name	Frmd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328510 CCDS:CCDS25959.1 GeneID:319710 MGI:2442579
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : FERM domain containing 6 protein_id : NP_082403.2

name	Actr10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789887 CCDS:CCDS25960.1 GeneID:56444 MGI:1891654
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005869 - dynactin complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IDA] codon_start : 1 exception : mismatches in translation note : actin-related protein 11; actin-related protein 10 homolog; actin-related protein 11 homolog product : ARP10 actin-related protein 10 homolog protein_id : NP_062759.1

name	Psma3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981534 CCDS:CCDS25961.1 GeneID:19167 MGI:104883
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005839 - proteasome core complex (sensu Eukaryota) [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004298 - threonine endopeptidase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : proteasome (prosome, macropain) subunit, alpha type 3 protein_id : NP_035314.2

name	3110056K07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392923 GeneID:73204 MGI:1920454
definition	codon_start : 1 product : hypothetical protein LOC73204 protein_id : XP_903355.2

name	Arid4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487105 GeneID:238247 MGI:2444354
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0000785 - chromatin [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006333 - chromatin assembly or disassembly [Evidence IEA] codon_start : 1 note : retinoblastoma binding protein 1 product : retinoblastoma-binding protein 1 protein_id : NP_001074664.1

name	Timm9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67846109 CCDS:CCDS25962.1 GeneID:30056 MGI:1353436
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : translocase of inner mitochondrial membrane 10 homolog protein_id : NP_001020024.1

name	Timm9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67846099 CCDS:CCDS25962.1 GeneID:30056 MGI:1353436
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : translocase of inner mitochondrial membrane 10 homolog protein_id : NP_001020025.1

name	Timm9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305573 CCDS:CCDS25962.1 GeneID:30056 MGI:1353436
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : translocase of inner mitochondrial membrane 10 homolog protein_id : NP_038924.1

name	LOC100041035 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263289 GeneID:100041035
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475734.1

name	2700049A03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82942749 GeneID:76967 MGI:1924217
definition	codon_start : 1 product : hypothetical protein LOC76967 protein_id : XP_126944.5

name	Dact1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24158474 CCDS:CCDS25963.1 GeneID:59036 MGI:1891740
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007275 - development [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : thymus expressed gene 3 product : dapper 1 protein_id : NP_067507.2

name	LOC100041190 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263298 GeneID:100041190
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476005.1

name	Daam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191777 CCDS:CCDS25964.1 GeneID:208846 MGI:1914596
definition	GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 1 protein_id : NP_080378.2

name	Daam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191779 CCDS:CCDS25964.1 GeneID:208846 MGI:1914596
definition	GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 1 protein_id : NP_766052.2

name	Gpr135 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32306524 CCDS:CCDS25965.1 GeneID:238252 MGI:2676315
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 135 protein_id : NP_861417.1

name	LOC100041239 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263301 GeneID:100041239
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476112.1

name	2810055F11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313074 CCDS:CCDS25966.1 GeneID:67217 MGI:1914467
definition	codon_start : 1 product : hypothetical protein LOC67217 protein_id : NP_080314.1

name	1200003C05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312774 CCDS:CCDS25967.1 GeneID:104771 MGI:1915057
definition	codon_start : 1 product : JNK1-associated membrane protein protein_id : NP_077167.1

name	4930403N07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263294 GeneID:73936 MGI:1921186
definition	codon_start : 1 product : hypothetical protein LOC73936 protein_id : XP_987572.2

name	Rtn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982561 CCDS:CCDS25968.1 GeneID:104001 MGI:1933947
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform RTN1-A is encoded by transcript variant 1 product : reticulon 1 isoform RTN1-A protein_id : NP_703187.2

name	Rtn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090141 CCDS:CCDS25969.1 GeneID:104001 MGI:1933947
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform RTN1-C is encoded by transcript variant 2 product : reticulon 1 isoform RTN1-C protein_id : NP_001007597.1

name	Lrrc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313428 GeneID:78257 MGI:1925507
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine rich repeat containing 9 protein_id : NP_084346.1

name	1810048J11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430539 GeneID:67708 MGI:1914958
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67708 protein_id : NP_080603.2

name	LOC666162 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666162
definition	number : 4 pseudo : _no_value

name	LOC666162 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666162
definition	number : 3 pseudo : _no_value

name	LOC666162 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666162
definition	number : 2 pseudo : _no_value

name	LOC666162 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666162
definition	number : 1 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 6 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 5 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 4 pseudo : _no_value

name	LOC100041323 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041323
definition	number : 1 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 3 pseudo : _no_value

name	LOC666213 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263292 GeneID:666213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 13 ESTs, 7 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_032449.1

name	LOC666220 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263299 GeneID:666220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to Ac2-210 pseudo : _no_value transcript_id : XR_032527.1

clone name	MSMg01-326I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410D21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-392N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458I22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-321O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085M11.T7 (MSMg01no085_m11.b1)	MSMg01-085M11.TJ (MSMg01no085_m11.g1)
ACC	AG305263	AG305264
length	1,245	1,633
length of high quality (start - end)	181 (117 - 297)	---
definition	CHROMAT_FILE: MSMg01no085_m11.b1 PHD_FILE: MSMg01no085_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:00 2005	CHROMAT_FILE: MSMg01no085_m11.g1 PHD_FILE: MSMg01no085_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:00 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TATGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTCCTGACTA GGCTAGGTCCTTAAAAGAGCTGTAGAAATGTTCTCTGTTCTCTAAAGGAC CTTTGCTTGGAGCCCTTCCAAAGAGAGGAGAAGCTTCCAGAATGCCCATA GATATCCCATGACTCAATTGTAAAGACTCGATAGATATCAGGAGTCCAGG TCTTTGCTTCCCAGTATTAGATCAAGCAATTAATGATGCCCTGTTTTTCC TAATAGATGGGGGAGGAGGTCAGTGAATGGTTTGAACGCTGATTACAATT GTGGGTACCGTGTTCCTCTCTTCCTCCAGAGACAGCATAGTGCAGTAGCA AGCTTCAGGGCTACAGGGGCGATGGACCTGTGGATTTGATTTTTTTGACT CTGTATAAATAGCCCTACCTCACATCCTTGGTATGTTACAACTGGTTTTA TCGAGTCCGCCTCTTGGTTGTTTGTGTATATTCTGTTTTATAGTTTCTTA CTCATATCTATCTTTTTTTGTTTATTTGTTTTCACATCTGTTCTTTATTC CCGTTTTCTGTTTATGTTCCTTCCTTTTGCATTTCTTTTTAATTCTTTTC GTATTTGTTTTGATTTGTTTGATTTCTTTTTCTGTTCTTATTTTTTTTTC GCTCTTTACCTCTTTATTTTCCTTCTTGTTTTTTTTTCTTCTTTTTTTTT TTTCCCTTTTTTTTTTTTCAATTCTTCTTTCTTTTTCCTAGTTATTCTTC TTATCTTGATTTCTTCTCTTATTTCTTTTTTTCTATTTTTTCCTTTCTTT CTTTTTTTCTTTTTTTTTTTTTCTATCCTTTCTTTTTCCTTCTTTATATA TTTTTTTTTTTTTCTTATATTTATTTTTATTTCTTTTCTTTCTCTTTTTA CTTATTTTTATTATTTTTTTCTTCTTTATTTTTTTTTTTATTTTTTTTCT TCTTTTTATTTTTTTTTTCNTTCTTTATTTTCTTCTTCTATTATCATATC ATTTATCCTTTTTTTTTTTCTCCTCTTTTTTATTATTTATTTTTTTTTCT TTTCTCTTTTTCTCTCTATTTATTTTTATTTTTCCTTTCATTTCTCTCTC CTTCTTTTTTTTTTTCTTTTTTTTTTCTTTTCTTTTTTCTTTTCTTGCAT TCTTTTTTTATTTTTTTTCATTTTTTCTTTCTTTTTTGTTTTCTTTTNTA TCTCTTCTTCTTTATATCTTTTTTTTTTTCTTTTCTCTTTTTTGT	NNNGGACACTGCCAGGTCGGCGGCGCGXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXCCCCTTTAAAACCCCGCGAGGANGGGCGGAGCAGA AGGGAGACCCTCTAAAAGACCCCCCCGTGATAATGATTGCTGCTGAGGTC TGAGTGCCAGGTGGTAAGGACCCCTTGCAACCTCACTGCCATATGCTCAG ATACCATTGGCTCCTGAATGAACCGGCTGGCAAGCTACCCTCCCCATGTT TGGAACCCTCTAACTTCATCTTGCACGATACTCCCACACTCCAACTTTTA CACTCACCACCTAAATACTAACTCATAAGTCATCTCTACCATTTCTTAAA CTCACCTCCTTTCCCCCCCCCTCTTCTTTACACTGTCATTCACGTCAGCA AATAACACCCTCCCTCTCTTTTTTTTTTGAATCATGACAATGACAATACA TTTTTATCGACGTGAGAATCTACCCCCCCTTTTTTATACTCCACCCACAC TTATTTCTCTTTTAAACCCTTTTAAACTTATATTTCTTTCCGTCTATAAC TCTCCTATGTAATCAATTAAGCATCCACTTCCAATATCTAGATCCTCCCT CCTTAACATACTCNNTTCTCTCTCTCACCTATTCCAAAAGAACTTCTTAA CCATATCTCTCTCCCTATCCCTACTCTAATTTTAGCACTAAACTACCATC ATAACTTTCAAATATATCAAAATAACCATTCTATTTCCCTAACGAACCTG AACTTCCTCCAATCATCTCTCACTCATACTTTCCCTTCCACTCCCTAAAC TTTCTCACTCTCTTGTGCTAATCCTCCTCCTCACTCCTCAGTTNTTTCTT TTGTGTTATGACAGGAGCGGGCTCCCTCNNNNANNNNGNGNGGAGNNGCN GATNATAATGCTCATAGTTCAAGATATGAAAAAAACAACCTCTAATAAAT AAAATTTATTTACCCCACTCAAGGTGCGAATATCTCCCNNTNAATAGGCA CAAAACAGCGCATAATAATATATTAATAACCTCCACCAATCACAATTACA GTTTCTCTATTTGTCTCATCACCACTACATTTTCTCAAACCCGCCTTTAC TTCCTCCTACATATTTAAAACTTCTCTTCTACCTTTAAATATTATTAGTT TCATCCATTTAGGCCACCTACCACCCGTCCTCACTNCCCTGNNNNNNNNN NNNNNNNTATTAGTATTTGGTTCTCTAAACTTACTTCACATGCCTCCCAC AGTCTCCACACTCTAATCCATCAACTCTCACTATATATCAATGATCTTCT TACCACTACTCNTACCTTTCATATACGTGCTTACTCTCTTCCTTACAGAA AAAAAGTATTAANTTNTNNNTCAACCCCCTTTNTCCACCGACNCATACCN TTGGTTGCCTATCGTAATCCCTCTATTCTCATCTATATTCGTCTACCTAC ACACCTCCTTAGCGTCTCAGTTTCGTCACTGTTCTCTCTTCTACACAGAT CATCTTCAAAAGGAGACTCAAAATAAAATAGAGCTAAGACGAAAACACTA CGCCTTTTNTCCACCAAACGCNNNAAAGAAGCTAAAAAGAGAATATTCTC ACTCTGAGGCGCCACTCACATATTATACTGAAT
quality values	Open. Hide. 8 8 8 11 10 11 13 13 8 8 8 8 8 13 13 22 28 19 15 8 8 8 21 21 37 34 34 34 37 48 50 48 48 42 40 39 30 30 39 27 23 13 13 18 29 32 36 36 33 41 37 37 37 37 21 21 9 9 7 8 8 8 8 8 17 18 22 23 23 18 21 12 16 22 24 35 39 39 59 59 57 57 57 53 50 50 50 53 36 36 33 33 33 33 33 25 21 13 8 8 8 8 10 10 10 12 12 22 12 12 12 15 12 12 12 13 18 23 24 35 39 39 43 43 48 48 48 43 43 37 37 37 39 39 39 40 39 36 43 43 43 43 43 43 43 43 39 43 46 36 36 36 46 46 54 54 54 54 54 48 48 48 42 42 37 30 30 37 42 38 25 16 11 12 13 24 32 42 43 42 42 42 37 37 39 47 57 44 44 43 43 57 57 42 48 35 35 32 44 43 31 31 43 44 57 57 37 37 43 43 43 43 35 28 28 36 28 36 14 19 19 44 43 52 52 43 43 42 43 42 44 42 33 33 44 44 43 41 41 43 57 57 57 57 57 57 57 57 57 38 38 16 16 16 24 24 33 43 38 33 33 43 28 28 43 43 43 43 43 43 52 52 43 52 52 43 43 42 31 31 43 43 43 30 24 11 11 11 11 12 38 32 37 30 27 12 11 11 18 24 24 24 15 12 11 11 11 16 21 11 9 9 12 23 12 18 20 41 28 33 28 41 27 27 34 26 20 15 13 11 11 11 18 18 14 15 15 19 12 12 12 12 13 8 8 8 8 8 10 15 11 12 12 12 16 11 11 12 12 11 13 13 17 11 12 11 11 9 9 9 9 13 21 15 15 11 15 11 21 17 21 12 13 13 23 21 21 23 21 12 12 13 19 14 15 20 22 17 15 10 10 10 10 8 9 9 10 10 10 10 10 9 9 9 9 9 9 9 9 11 10 10 10 13 13 14 21 22 24 10 8 8 8 8 8 12 11 8 8 8 8 8 8 8 8 11 8 10 10 10 8 8 10 9 9 8 8 8 10 10 10 10 8 6 10 10 10 8 8 6 6 8 8 9 9 10 10 10 10 8 10 8 9 15 10 10 10 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 9 12 8 10 10 10 10 9 7 8 8 10 10 10 10 15 17 8 8 6 6 8 8 10 10 8 10 10 10 11 8 8 8 6 8 8 11 11 10 11 15 11 11 11 10 10 12 10 10 16 16 13 10 10 10 10 10 10 8 6 6 6 6 8 8 8 8 13 19 22 22 15 13 8 9 9 9 9 13 9 11 11 15 10 10 8 8 8 10 7 6 8 8 8 8 10 10 8 8 8 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 10 10 10 9 9 12 12 11 8 6 6 6 8 8 9 8 8 6 6 8 8 10 10 10 10 10 8 8 8 8 8 10 15 14 8 8 8 8 8 8 8 8 8 8 8 8 14 9 10 10 8 8 8 8 6 6 6 10 8 10 10 10 10 10 12 8 8 8 8 8 8 13 10 8 8 8 11 12 13 12 8 8 8 8 11 10 9 9 8 10 9 8 8 8 8 8 8 8 8 8 6 6 10 8 6 6 10 8 9 9 8 8 8 8 8 8 8 8 8 9 9 10 8 8 8 8 8 8 8 8 8 8 10 8 8 8 9 10 10 10 10 10 8 8 8 8 8 8 12 11 12 12 15 12 15 15 13 8 11 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 6 7 10 8 10 8 8 8 8 8 8 8 8 8 8 9 9 9 9 10 10 8 10 8 9 9 8 10 9 10 9 10 11 16 13 13 13 10 9 9 10 10 10 10 8 8 6 6 8 8 9 10 10 11 10 16 12 12 9 12 15 11 17 11 10 8 8 8 8 8 8 8 7 7 12 12 9 9 9 8 10 7 6 8 8 8 10 8 8 8 6 6 8 8 8 8 10 10 10 10 8 8 6 6 8 8 11 11 9 11 9 8 8 8 8 8 11 10 10 7 7 8 8 10 11 22 11 11 10 15 14 12 12 12 11 17 8 8 8 8 8 8 13 19 19 17 16 15 12 8 8 8 10 13 12 10 6 6 8 10 12 12 16 13 13 12 18 11 3 0 3 9 9 8 10 8 8 10 8 8 6 6 8 8 8 9 8 8 8 8 11 11 8 8 6 6 6 6 8 8 8 8 10 8 8 8 8 11 11 12 12 13 10 10 10 11 8 10 8 8 6 6 8 8 10 9 8 8 9 9 9 6 8 8 8 8 13 6 6 6 13 12 15 18 12 10 13 10 10 10 10 11 10 8 6 6 8 10 8 10 8 8 8 8 8 10 10 10 11 14 9 9 9 13 13 17 12 13 12 16 12 12 8 8 8 7 7 8 8 6 6 8 6 6 8 8 9 10 8 8 8 8 8 8 12 12 23 24 20 15 16 15 8 8 6 6 8 8 9 11 12 9 9 8 8 6 7 10 11 10 8 10 11 15 14 10 10 6 6 8 8 10 9 10 10 8 8 6 6 8 8 9 10 10 15 14 10 10 9 9 9 10 11 11 11 8 8 8 8 8 8 10 10 13 13 12 20 10 13 10 10 8 8 12 12 8 8 6 6 7 6 10 10 11 8 9 3 0 3 6 8 8 8 8 8 8 8 8 7 6 8 8 8 6 6 8 10 6 6 8 10 9 9 9 15 15 16 10 10 8 8 12 15 10 10 8 8 8 8 10 10 15 11 11 11	Open. Hide. 0 0 0 3 6 6 6 6 6 6 6 6 8 10 8 6 6 6 6 6 14 15 12 15 15 8 7 6 3 0 3 15 19 21 13 10 10 22 15 30 15 19 8 7 7 11 11 20 28 30 37 37 48 48 48 48 48 48 41 41 47 30 27 15 11 9 9 12 9 12 9 13 15 17 15 24 16 11 9 9 9 9 13 17 23 25 3 0 3 27 27 41 30 31 31 31 31 37 48 48 41 41 41 39 23 27 13 12 7 7 9 9 9 8 10 10 11 20 20 22 17 11 9 10 8 8 8 8 8 8 8 8 8 8 8 12 15 26 15 8 8 8 8 8 19 13 18 13 12 11 9 9 10 9 9 9 10 10 9 9 9 8 8 6 6 8 8 8 9 9 10 9 11 11 16 11 11 9 9 9 9 8 8 6 6 6 8 8 8 8 10 8 8 8 9 8 8 6 6 8 8 10 11 11 11 12 15 15 14 11 10 8 8 8 10 8 9 8 10 8 8 9 9 10 10 10 8 8 8 8 8 8 9 8 8 8 8 8 8 8 9 9 9 12 12 11 11 11 11 11 11 11 11 8 9 8 8 6 6 8 8 9 9 9 8 8 8 8 10 8 8 8 8 8 8 9 9 8 8 8 7 9 10 8 10 9 9 8 10 10 8 8 8 8 9 11 12 11 9 9 9 9 9 9 10 10 8 8 8 8 8 10 10 8 8 8 8 8 8 8 7 6 8 8 8 6 6 8 8 9 9 11 10 10 10 10 11 11 10 8 8 8 8 8 8 8 8 8 13 10 9 9 9 8 8 6 6 8 8 8 8 7 7 8 8 10 10 10 8 8 6 6 8 8 8 8 8 8 8 6 6 8 8 10 10 9 10 9 9 8 8 8 8 8 8 9 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 10 12 9 11 10 11 21 19 13 8 8 8 8 9 8 8 6 7 8 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 10 10 10 10 10 10 10 10 10 8 8 8 8 6 6 6 6 8 8 6 6 8 8 8 8 11 9 10 8 9 9 10 18 21 14 9 9 9 8 8 6 6 6 7 9 13 7 6 8 8 13 8 8 6 6 8 8 8 8 6 6 10 10 12 12 11 14 10 12 8 8 8 8 12 12 12 12 12 8 8 8 8 8 8 11 10 7 6 8 6 6 6 6 8 9 9 8 8 8 6 8 6 6 8 8 8 8 10 8 8 6 6 8 8 12 9 8 8 8 8 6 6 8 8 6 6 10 8 7 6 8 8 10 10 8 8 8 8 8 8 9 8 8 8 8 8 6 6 6 6 6 6 6 6 8 8 8 8 8 6 6 8 8 3 0 0 3 8 8 6 6 6 6 8 8 8 6 6 10 8 10 10 10 10 11 11 12 11 8 8 6 6 8 7 7 12 6 6 8 8 8 8 8 6 6 6 8 8 8 8 8 7 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 16 11 10 9 8 8 8 8 8 8 9 8 9 8 10 8 8 8 8 8 8 9 9 9 9 10 10 10 11 10 8 6 8 8 8 8 10 8 9 9 8 8 8 8 8 8 10 10 15 13 16 11 11 8 8 8 8 8 6 6 8 8 8 6 6 6 7 6 6 8 10 10 8 8 6 6 8 8 8 6 6 8 8 6 6 8 8 8 8 8 8 9 8 8 6 6 8 8 13 10 9 9 9 8 8 8 8 8 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 6 6 8 8 10 18 13 13 11 11 11 8 8 6 6 8 8 8 8 8 6 8 8 9 8 8 8 8 3 0 3 14 8 6 6 8 8 8 8 8 6 6 8 8 10 6 8 6 6 8 8 9 9 9 9 9 8 8 6 8 8 6 9 3 0 0 0 0 3 0 0 0 0 3 0 3 0 3 11 11 3 0 0 3 3 0 3 7 3 0 3 8 10 10 8 6 6 10 7 7 7 6 6 6 8 6 6 6 6 8 8 8 6 6 9 11 12 11 8 8 6 6 8 8 8 7 9 7 7 8 8 7 8 10 8 8 8 11 10 9 9 8 8 6 6 8 8 6 6 7 6 6 6 8 6 6 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 3 0 0 3 0 3 8 8 8 8 8 6 6 6 6 8 8 8 11 10 9 9 9 10 10 9 10 10 8 8 6 6 8 6 7 10 10 8 6 6 6 8 8 9 9 9 9 9 10 9 8 8 8 8 8 8 10 10 11 10 11 11 9 7 7 10 10 11 10 8 8 8 8 8 6 6 8 6 10 8 8 8 8 11 11 10 11 9 8 8 6 6 8 8 9 8 8 8 8 8 8 10 9 9 9 11 11 15 10 10 10 13 8 6 6 6 8 7 7 8 8 8 6 6 8 8 8 8 7 7 8 8 7 6 8 8 8 9 9 9 8 8 6 6 8 6 6 8 6 6 10 8 8 8 8 9 9 10 8 6 6 8 8 11 8 8 8 8 6 6 8 8 9 9 10 9 9 9 9 9 10 9 8 8 10 10 8 8 8 8 6 6 6 6 8 8 8 3 0 3 9 9 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 10 10 8 8 9 8 8 8 10 11 11 8 8 7 6 6 6 8 8 11 9 9 8 8 8 8 8 8 8 6 6 8 8 8 9 9 10 10 8 8 8 8 8 8 8 6 6 8 8 8 8 10 8 9 8 9 9 8 8 10 8 8 8 8 8 10 11 10 8 11 11 8 8 8 9 10 8 8 8 9 9 9 10 10 10 10 10 9 9 8 8 8 8 8 8 6 6 8 8 8 8 3 0 3 6 6 7 6 8 8 10 10 10 10 10 10 6 6 8 7 8 8 8 8 8 8 8 11 8 8 6 6 8 8 11 8 8 8 9 8 8 9 9 7 8 7 7 7 8 8 8 8 3 0 3 3 0 3 0 0 0 3 10 9 9 9 7 6 6 6 6 8 3 0 3 8 8 8 8 8 8 6 3 0 3 7 8 6 6 3 0 3 6 6 6 6 8 8 8 10 10 8 8 6 6 8 8 6 8 8 8 8 8 8 8 8 8 8 8 6 6 6 7 8 8 8 8 8 8 8 8 8 8 9 9 9 8 8 6 6 7 7 6 8 8 8 10 12 10 8 8 6 6 6 6 6 8 10 8 8 8 9 9 8 8 8 8 8 8 10 8 8 9 8 13 17 19 19 8 8 8 8 6 6 10 6 7 8 8 6 6 6 6 6 6 6 8 8 9 9 13 11 10 9 9 9 9 9 8 8 8 9 8 8 10 11 8 8 8 6 8 6 6 8 8 8 10 9 8 8 8 8 8 8 9 11 9 8 8 6 7 7 7 8 8 15 10 10 3 0 3 6 8 6 7 8 8 8 8 8 8 3 0 0 0 3 8 6 6 6 8 6 6 8 8 9 9 9 8 8 8 8 8 8 8 10 8 6 6 8 6 8 8 8 9 9 9 9 6 8 6 6 6 7 6 8 9 10 10 9 9 11 10 10 8 8 8 8 8 6 7 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_m11.b1 MSMg01no085_m11.b1 CHROMAT_FILE:
MSMg01no085_m11.b1 PHD_FILE: MSMg01no085_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:00 2005
         (181 letters)



>mm_chr12_72727255_72727835
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaaagagaggagaagcttccagaatgcccatagatatcccatgactcaattgtaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaaagagaggagaagcttccagaatgcccatagatatcccatgactcaattgtaaaga 260

                                                                       
Query: 61  ctcgatagatatcaggagtccaggtctttgcttcccagtattagatcaagcaattaatga 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctcgatagatatcaggagtccaggtctttgtttcccagtattagatcaagcaattaatga 320

                                                                       
Query: 121 tgccctgtttttcctaatagatgggggaggaggtcagtgaatggtttgaacgctgattac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgccctgtttttcctaatagatgggggaggaggtcagtgaatggtttgaaggctgattac 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information