BAC Information

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BAC

Clone NameMSMg01-086F17
Chromosome12 (Build37)
Map Location 16,296,265 - 16,296,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086F17.T7 (MSMg01no086_f17.b1)MSMg01-086F17.TJ (MSMg01no086_f17.g1)
ACCAG305693AG305694
length703702
length of high quality
(start - end)
394 (44 - 437)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no086_f17.b1 PHD_FILE: MSMg01no086_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:04 2005CHROMAT_FILE: MSMg01no086_f17.g1 PHD_FILE: MSMg01no086_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTCATCTTCCAACAGTCAGATCTCAATCATCACTGAAAGAAGTCA
GGCCAGGATCTTAAGGCCGGAGCCTGGAAGCAGGAACTGAAGCAGAGGCA
ATAGAGGGGTGTTGCTTTCTAGATTGTTCCTCTTGGCTCATTGCTCAGCA
TTCGTTGTTATAGTAGCCAAAGTCACCTGTCCAGGGGTTGCACTGCTCAC
AGTGAGCTGGGTCTTCCCACACAATAAATAATTAAGAAAATGTCTTACAA
GCTTGCCTACTGGCCAATCTTATGGAAGCATTTTCTGTTCTGTGGTTTCT
TCTTTTTATATCACTCTAGCTTGCTTAAAGTTCACACGCACACAACACAC
ACACACACACACACACACACACACACACACACACACTCACACTCACACAC
ACACACACTCACCATCACCACCAACCAACCAAACCAAACCAAAAAAAAAA
AAAAAAAAATTAAAGGACTTGAGTTCAGTTTGTAGCACCAATATCAGATG
TTACATGGCTCACCACTATCCACAATAAGACCCTCTTGCTGAGGGTCTAG
CGCCCTCTTCTGGACTCCACCTGTACCTGCATATACCCCATCCCTGACAT
ACATAAGTGCATAAACAAAGTATCTCTTATAAACAACAAGATTTTGTTGA
AAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTCCAAGAATATGCAATAAGGACAC
TCTGTAGTAAGAAGTCTGAGATCCCAAGAGTAGATTAAAGTTAGGGACTA
CTAGCTGGGAATAAATGTATAAAAATACTTCAGAGATTGCTGTGGTTGTT
GAAATGAAGTGGTATAAACAAAGCACCCGAAGATAGCATGGGTGTCATTG
TAATGTCCCATGTAAATAAAAATCTATTCTGTTTGGTCACAGTATTTTTT
TTACGGCATCAATACCTACATAATGCTATTAAACAAATTCCAACAGTTTT
TTTGGGGGGGTGTCTGGTATTTTATCACATATTTGGTGCTTTTCTAAAGA
GAGACATGGGGTAGAAAGAGAGAGGGGGTGGGAAGGAGAGACAGGGAGTA
CTTGTTACATCTTCCATAAGCGTTACAAACAAATGCTAAGTCGTTTGTAC
TAACATATTCAACTTGTAGTCACAAAGGTTTGTCACTAACCATCATTACA
TTCTCTCTCCTTGTACATTGCGAAATTTTTACTCCTACTAAAAGGTTTAG
TTTTGCTCATTCCTTACCTCCCCATGTTCACCGCATTTGCCTATGTCCCC
ATTCCTCACCTCACATCTTGTTCCCCCTTATCCCTTGCCCTTTTTTTTCT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_f17.g1 MSMg01no086_f17.g1 CHROMAT_FILE:
MSMg01no086_f17.g1 PHD_FILE: MSMg01no086_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:04 2005
         (291 letters)



>mm_chr12_16296065_16296755
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctccaagaatatgcaataaggacactctgtagtaagaagtctgagatcccaagagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctccaagaatatgcaataaggacactctgtagtaagaagtctgagatcccaagagta 260

                                                                       
Query: 61  gattaaagttagggactactagctgggaataaatgtataaaaatacttcagagattgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaaagttagggactactagctgggaataaatgtataaaaatacttcagagattgctg 320

                                                                       
Query: 121 tggttgttgaaatgaagtggtataaacaaagcacccgaagatagcatgggtgtcattgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttgttgaaatgaagtggtataaacaaagcacccgaagatagcatgggtgtcattgta 380

                                                                       
Query: 181 atgtcccatgtaaataaaaatctattctgtttggtcacagtattttttttacggcatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcccatgtaaataaaaatctattctgtttggtcacagtattttttttacggcatcaa 440

                                                              
Query: 241 tacctacataatgctattaaacaaattccaacagtttttttgggggggtgt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctacataatgctattaaacaaattccaacagtttttttgggggggtgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)