BAC Information

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BAC

Clone NameMSMg01-086H05
Chromosome12 (Build37)
Map Location 46,928,482 - 46,928,783
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086H05.T7 (MSMg01no086_h05.b1)MSMg01-086H05.TJ (MSMg01no086_h05.g1)
ACCAG305758AG305759
length679688
length of high quality
(start - end)
302 (46 - 347)288 (55 - 342)
definitionCHROMAT_FILE: MSMg01no086_h05.b1 PHD_FILE: MSMg01no086_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:12 2005CHROMAT_FILE: MSMg01no086_h05.g1 PHD_FILE: MSMg01no086_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATATCGAGAGGATCCGCGGAATTCTCATACCTGCGCATGGAGCC
TTCACAGGACCAAGGCCTCTCCTTCCATTGATATCAAACAAGGCCATCCT
CTGCTACATATGCAGCTGGAGCCATTGGTCCCTCCATGTGTACCTTTGGA
TGGTGGTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTGGTTCACATTGT
TGTTCCTCTTATGGGGCTGCTACCCACATCCATACGCACCTACAATAAAA
TAAATACATATAAATTGAAACTTAGATCCTGTAAACATTCCACTGCATGG
ACATCAGAAGTCTACAATTATCCCCATCCTGTTCAGAATATATAGTTCTT
ACAATGAACTTGCAAGAACTCCCAACTTTGTTTGTCCTTTCTTGTTATTT
TTCTGTCCCAACTTCATACTAGTTACTTTTTGTCTGTTTGTTTGTTTTTG
TTTGCTTGCTTGTTTGCCTTTCAATTCCAGGCACACTATATCCCTTGCTC
CTCATTGACCCCACAAACTATGGGGACTTTATACTGGCTAACTCATTTGC
TTATGACACATTTTCTCTAGATATACGCATACGGGAGACCCCTTTACCAT
CTTGTACATTGCTCCATACATCATACCTGTTAACCCCTTGTTATGTAACC
CCCTCTTGATTTTGTGCTCTATCTCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGTGGAGCAATAGAGACACCAAAACACCCTCCAAATTTCTACCCA
AAATTTATCATGACAACAAGAAATGCAAGCATGGGAGAGGGAGCAGAGAC
TGAGGGAATGACTAACTAATAACCATCCCAATTTGAGACTCAATACATGG
GCAAGCACCAATCACTAACACTATGAATGATACTCTGTTATTCTTGAGTA
CAGGAACAATTGTACTCTGATAGGCTCTAGCCAGCAGCTGACTCAGATAC
AGACAAAGAGTGGGTGGAGCTTTGGAATTCTTAAGAAGGATTAAGAGCAA
GGACTCGCGGGTCTTAAAGAGGATATGAACTTCAAAGGAAGATCAACAGA
GCCAAATAACCTGAAGCCTTAGAGATCTCAGAGTCAGAACCACCAACCAA
AGAACATACATGGGCTGGACCTAGGACCTGCAGCTCATATGTAGCAGGTT
GGTTTTCATGTGGATCCTGACCAACTATAGTGGCAGCTATGCCAACAGCC
ATTGCCTGTATATGGGATATGTTGTACTACCTGGGCTTCTTAGTTTGGCC
TCAGAGGGAAAAGAAGTGACTAGACTTGCAGAGACTTGAATTGCTAGGGC
GGAAGGTATTTGCAGAGGGCCCCACCTGTCCACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_h05.b1 MSMg01no086_h05.b1 CHROMAT_FILE:
MSMg01no086_h05.b1 PHD_FILE: MSMg01no086_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:12 2005
         (302 letters)



>mm_chr12_46928282_46928983
          Length = 702

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccttcacaggaccaaggcctctccttccattgatatcaaacaaggccatcctctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagccttcacaggaccaaggcctctccttccattgatatcaaacaaggccatcctctgct 260

                                                                       
Query: 61  acatatgcagctggagccattggtccctccatgtgtacctttggatggtggtttagtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatgcagctggagccattggtccctccatgtgtacctttggatggtggtttagtccc 320

                                                                       
Query: 121 agggagctctgggggtactggttggttcacattgttgttcctcttatggggctgctaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggagctctgggggtactggttggttcacattgttgttcctcttatggggctgctaccc 380

                                                                       
Query: 181 acatccatacgcacctacaataaaataaatacatataaattgaaacttagatcctgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatccatacgcacctacaataaaataaatacatataaattgaaacttagatcctgtaaa 440

                                                                       
Query: 241 cattccactgcatggacatcagaagtctacaattatccccatcctgttcagaatatatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattccactgcatggacatcagaagtctacaattatccccatcctgttcagaatatatag 500

             
Query: 301 tt 302
           ||
Sbjct: 501 tt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)