BAC Information

Click to search

BAC

Clone NameMSMg01-087P10
Chromosome12 (Build37)
Map Location 54,038,441 - 54,038,667
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneHeatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087P10.T7 (MSMg01no087_p10.b1)MSMg01-087P10.TJ (MSMg01no087_p10.g1)
ACCAG306844AG306845
length685969
length of high quality
(start - end)
227 (74 - 300)---
definitionCHROMAT_FILE: MSMg01no087_p10.b1 PHD_FILE: MSMg01no087_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:16 2005CHROMAT_FILE: MSMg01no087_p10.g1 PHD_FILE: MSMg01no087_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAAACTTTGCCTAAGAACTGGTTGAAGGCCTAAGCTTCTGCTAATGCA
AAGACCTACAGAGAATATGCCAAACGTCCACATGTGTGAACCGGCAGGGA
AATAATCACATGTGTATGGGCAGCCTGCCTTCAACCCATAATGATGTCTA
TGTTCACCCTAGTGGGTATGCATTGTGTCTATAAGAACAGCTCTCATTCA
TTATCTTAATGTTACTTCCAGAGCTCCTACATCAAAAAGCATGTCAACGT
GAAGTTTTCAGGAGTGTGATTTCAATTGGAACTCGGGCGGATGGCAAGCC
CCACATAATATGAACAGACCGTTTGGAGGCAGTATTTCATCTTATAAGTA
TCACAGTATTGCCTGCAGTATATGAAACATTTATAAATCTTGAAGGCCAA
TCTGATAATGCAAATATTAATAATACATAAGGAAGTGAATCATATGCAGC
AATTTACGTCTATGCTTCCTCATTCCTAATAGTCTGGAGACATATCCACC
CGCAATATTTCATGGGGATTTACCTGCTTTGCGAAATGCTACGAGCTCCA
GACATTGTTGTCCTTCTTTCTCCCCGTTTTCCTTGATGTTACAGTGTCTG
CCTCCTTTCAACTTTACTGTCTTTAAAAAAATATCAGGACCCTTCGGTTC
CGTTTAGTTGCTTACCATTGAAACACGATTTTAAA
CTTTTTTTTCTCTTCCTTTTTTCCTCTCTCTTTTTCCCTTCTTTCTTTTC
CACTCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTGTGGAAGCTGGCATGC
TTGGGTTGGTGAGCTGTGTTATTTACTCCGTTATAGGGGGCTTTCTCTCT
TCTTTTCCCCCCTTCCCTCCCTCCCCTTTCTTTCTTCTCTTTCCTTCCTT
CTTTTCCCTCTTTTCTTTCTTCCTCTTTTTCCCTCCCCTCTCCCCCCTTT
CCTTTCCTCCATGTTTCCCTTCCCCTTCTTCTCCTCTCTTTCTTTCTCTC
TCTCTTCCTTCCCCTTCCCTCTCTTTTCCTTTTCCCCTCCTCCTCCTCTC
TCCCCTTTTCCCTTTTTCTTCCTCTCTCCTTTCCCTCTTCTTCCCTCCCC
TCCTTTTTTTTTTTTTTCCCCCCCCCCTCCCCCCCCATTCCTTTCTTTTT
CTTTACCCTTCCTTTTCCTCCTCCCCCCCCTTTCTCCTTTTCAAACAAAT
CACCTTCCTTCTGCTCGGGTGTTTCTCCTCCTCACTTCCTTCTTCTCTTT
TTTTCCCCTCTCCCTCTTCTTTCTTCCTCCTCTTCTTTTTCTCCCCTTAT
CTCTTTCCTTCTTTTCTCTTCCTTTTCTTCTTCTCCTCCCTTTATTCCCT
TTTTTCCCCTCCCACTTTCCTTCCCCCTCCTTATTTCCTTTCCAATCTCA
TTCTCTTATGTTTCCCTTTCTTTTCGTTTTTTTATTTCGCTTATTCCTCC
TCCTCCCCCTTTCCCCTCTTCTCCTTTCCTGCTCCCCCCTTCCCCTCCCT
TATCCCTATTCCCTCCCTCCTTCCCTTCTTTTCCCTCCTTCCCCTTTTCC
TTTACCTCCCCCTTTCTTCCCCTCTCCTTTTTTTCCCTCCCTCTTCTCTT
TCTCCTTTTCTCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_p10.b1 MSMg01no087_p10.b1 CHROMAT_FILE:
MSMg01no087_p10.b1 PHD_FILE: MSMg01no087_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:16 2005
         (227 letters)



>mm_chr12_54038241_54038867
          Length = 627

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgtccacatgtgtgaaccggcagggaaataatcacatgtgtatgggcagcctgccttca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 427 acgtccacatgtgtgaaccggcagggaaataatcagatgtgtatgggcagcctgccttca 368

                                                                       
Query: 61  acccataatgatgtctatgttcaccctagtgggtatgcattgtgtctataagaacagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acccataatgatgtctatgttcaccctagtgggtatgcattgtgtctataagaacagctc 308

                                                                       
Query: 121 tcattcattatcttaatgttacttccagagctcctacatcaaaaagcatgtcaacgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcattcattatcttaatgttacttccagagctcctacatcaaaaagcatgtcaacgtgaa 248

                                                          
Query: 181 gttttcaggagtgtgatttcaattggaactcgggcggatggcaagcc 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gttttcaggagtgtgatttcaattggaactcgggcggatggcaagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)