BAC Information

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BAC

Clone NameMSMg01-088G15
Chromosome12 (Build37)
Map Location 25,570,272 - 25,570,502
singlet/doubletsinglet
Overlap geneMboat2
Upstream geneLOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneEG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088G15.T7 (MSMg01no088_g15.b1)MSMg01-088G15.TJ (MSMg01no088_g15.g1)
ACCAG307177AG307178
length706760
length of high quality
(start - end)
191 (122 - 312)231 (185 - 415)
definitionCHROMAT_FILE: MSMg01no088_g15.b1 PHD_FILE: MSMg01no088_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:52 2005CHROMAT_FILE: MSMg01no088_g15.g1 PHD_FILE: MSMg01no088_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTATGCAGACCAGGCTGGCCTTGAACTCAGATCTCTCAGCCTCT
GCCTCCAGAGTTTTGTCCCCAAAGGTGTGCATATCATCACCCTGCTAATT
ATTTTTATTATGTTTGTGTCTTAGTCAGGGTTTCTATTCCTGGACAAAAT
ATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACAC
TTCCACACTGCTGTTCATCACCAAAGGAAGTCAGGACTTGAACTCAACCA
GGTCAGGAAGCAGGAGCTGATGTAGAGGCCATGGAGGTCCTCTCCACTTG
ATCACTATTTGAGAAAATGTCCCACAGCTGGATCTCATGGAGGCATTTCT
CCAACTGAAGCCCCCTTCTCTATGATAACTCCAGCCTGTGTCAAGTTGAC
ACACACACTCTCTATCTCTCTCTCTCTCACACACACACACACACGCTTCC
CCCCACTCCCTTTTTCTCACCCTCCCTCTTATTTTTAGCCACGTAATGTT
CGTCGCCATTGACTATGTCGTCCTTGACTTCCGGTTACTGTTGATTTACA
TGTTGCCTTGTTTATGCTTCTAAATTGCTGTCACCCCCCGGTATCTGGAC
GTAACAGTCCCGTTCGCGTTCTTGTCCCTGATTTGACGTTTACTGCTTTG
GTCAAG
TTTTTTGGGTTGGGTTTTTTGGGCTTTTGGTTTGGGCTCTTCCCCTTTTT
TCTCCCCCTAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGCCCACAAGAATG
CACGGACAAGTAGCACGTTCTCTTTTAACCCTACTGTAGAGGGCAGAGGG
CAGCACTACTCATCCTACAGAGCTGCACACCACCACACAGTGCTATCCAG
AACTGTCGCAATGATAGAAATACTCTCTATGTGCACTGGCCAAAACCATC
GCTGAACATGTCGGACATACAGCTCCCAAGCACCTGAAATGCAGCTGCTG
CAATCCAAGGACTGACTCTTATTATTACAGTTACTTTGTGAGAGGCCCAT
ACATGAAGAACATTTGTTATTCTTTCCACTCCTCCCTTTCCAACTATGCT
CCCTCTCAAATTCATGACCTCGCCCCCCATAAATATTATTGTTACTCCCA
CAGACGCACCCTGAATCTACTTATTGTTGCTCAAATGTATACGTAGTTCA
GGACTGACCCCATCCAGAACTGTATTAACACATATTATCTAATTATTATC
TATCATAACTATCACTATTATCATTATTACCACCCCTTGCTTTGAAAAAC
ATATGGAGATTTATACCACTACAAATCAAATTCAACTCCCCCCACCCATC
TTCCCTACATATCACCTATCACACCTACTCACAACCCTAAGCCCGTTTTC
CCCTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_g15.g1 MSMg01no088_g15.g1 CHROMAT_FILE:
MSMg01no088_g15.g1 PHD_FILE: MSMg01no088_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:52 2005
         (231 letters)



>mm_chr12_25570072_25570702
          Length = 631

 Score =  447 bits (231), Expect = e-130
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagagggcagagggcagcactactcatcctacagagctgcacaccaccacacagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgtagagggcagagggcagcactactcatcctacagagctgcacaccaccacacagtgct 372

                                                                       
Query: 61  atccagaactgtcgcaatgatagaaatactctctatgtgcactggccaaaaccatcgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atccagaactgtcgcaatgatagaaatactctctatgtgcactggccaaaaccatcgctg 312

                                                                       
Query: 121 aacatgtcggacatacagctcccaagcacctgaaatgcagctgctgcaatccaaggactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacatgtcggacatacagctcccaagcacctgaaatgcagctgctgcaatccaaggactg 252

                                                              
Query: 181 actcttattattacagttactttgtgagaggcccatacatgaagaacattt 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actcttattattacagttactttgtgagaggcccatacatgaagaacattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)