Query= MSMg01no089_g20.b1 MSMg01no089_g20.b1 CHROMAT_FILE:
MSMg01no089_g20.b1 PHD_FILE: MSMg01no089_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:13 2005
(269 letters)
>mm_chr12_5387946_5388616
Length = 671
Score = 484 bits (250), Expect = e-141
Identities = 262/266 (98%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 6 gaatt-agcacctttttca-taccacttgtttgcaggtggcaggagtgctaattaaacag 63
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagcaccttttttagtaccacttgtttgcaggtggcaggagtgctaattaaacag 265
Query: 64 agccactaacaattttcctgggtggctctgactcccaaattggcaggagacacaatctgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agccactaacaattttcctgggtggctctgactcccaaattggcaggagacacaatctgt 325
Query: 124 gtgcttctgagaacactcctcattgatgccttgctacatccacagtgggaggagggacgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgcttctgagaacactcctcattgatgccttgctacatccacagtgggaggagggacgt 385
Query: 184 tgagggatgcagctcagaacccagttattggttgatgaattatttatagtgatcaaactt 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 386 tgagggatgcagctcagaacccagttattggttgatgaattatttataatgatcaaactt 445
Query: 244 caactttacttttcaatgtttaagaa 269
||||||||||||||||||||||||||
Sbjct: 446 caactttacttttcaatgtttaagaa 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 671
Length adjustment: 9
Effective length of query: 260
Effective length of database: 662
Effective search space: 172120
Effective search space used: 172120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_g20.g1 MSMg01no089_g20.g1 CHROMAT_FILE:
MSMg01no089_g20.g1 PHD_FILE: MSMg01no089_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:14 2005
(200 letters)
>mm_chr12_5562431_5563033
Length = 603
Score = 346 bits (179), Expect = e-100
Identities = 197/203 (97%), Gaps = 3/203 (1%)
Strand = Plus / Minus
Query: 1 ctgtctg-atggagcttgtgtcaggagagctggccaggc-cactggataaagac-taatg 57
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 403 ctgtctgaatggagcttgtgtcaggagagctggccaggcacactggataaagacataata 344
Query: 58 taaacaatgaccctgagaaatcacactgggtgagaccaaggagcctccaaatgactagtc 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 taaacaatgaccctgagaaatcacactgggtgagaccaaggagcctcgaaatgactagtc 284
Query: 118 tgccttggacttaaatagaacatggaacagcatgagacaatgcagaacaagtacccattg 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 283 tgccttggacttaaatagaacatggaacagcatgagacaatgcagaagaagtacccattg 224
Query: 178 actagaaataaagccaaagtggt 200
|||||||||||||||||||||||
Sbjct: 223 actagaaataaagccaaagtggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 603
Length adjustment: 8
Effective length of query: 192
Effective length of database: 595
Effective search space: 114240
Effective search space used: 114240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
