BAC Information

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BAC

Clone NameMSMg01-089M18
Chromosome12 (Build37)
Map Location 38,051,556 - 38,051,859
singlet/doubletsinglet
Overlap geneA530016O06Rik
Upstream gene4930579E17Rik, LOC638858, Meox2
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089M18.T7 (MSMg01no089_m18.b1)MSMg01-089M18.TJ (MSMg01no089_m18.g1)
ACCAG308201AG308202
length709716
length of high quality
(start - end)
303 (66 - 368)532 (73 - 604)
definitionCHROMAT_FILE: MSMg01no089_m18.b1 PHD_FILE: MSMg01no089_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:44 2005CHROMAT_FILE: MSMg01no089_m18.g1 PHD_FILE: MSMg01no089_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGCACCTTCTGAAAATTCAAGTTTCTGTTCTCAGATATTAATTTCC
CAGGATAGAACTTGAAATATTAACTATTCGTTGCATGTGTGAAAACCTCT
GTTTTTTGGAGTCTACTTCTCATTGTTCAAATAGCTGTGATTAAGTGTCC
GAGAGCTACATTGCTCATTACGACAACAAAGGTTTGTATATATCCCAATT
AAAGAGTTAGCTTTAAAAACCCAGGCTTCATATTTTTAAAAAGAAATTAA
TAATTTTATACAAAATTACTAAGAAAATTTGGTAGACATTGTTATGTTCT
CACTGTAACATGTTGTGACGACCCCCGCTGTGCACTGAATATTTGACTCA
GGCTGAGTTTTTACATGCAAAGCATACAATTACCATTCACTGTGATCATG
ATCATTAATTTTAAATATTCTAGAAAATATGTATAGTAGATTAACGTGCT
GTAGTAATAATATTTATTTTGCCTCACAGATAGTTAACATACTAGGAAAA
GGAAAGTGTATACAATTTGTACTTTTAAATGTATACACAATTTCTAGGCT
ATCAGAAATCAATATACATTTATATGGTGAATAAATTCATTTACATGTGG
ACTTCAATTATTCAACAGGAAAAAATATTTTATTTACAAGATAAAAATCT
GAATGATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGCAGATGGATGAAACCGAAAAATA
TTATCCTGGGTGAGGTAACACAGTCACAAAAGAAAACACCTGGTACATAG
TCATTGATAAGTGGCTATTAGGAAAAAAGTTCTTGAAATGCCCAAAATAC
AACTCACGGAACATATAAACATGGAAGATCAAAGTGTGAATGCTTCAATC
CTACTTAGAAGGGGGAACAAAATAATCACTGAAGGTAGAGAGAAGGAAAG
GGAGAGGGACAGAAAAAAAGGGCTGGGGCAGGTGTGGGAAGAGACAGGGG
GAGACGTTCAGAGGGTCAGGAAATTGAATGGTGGTATGTAGCAGTGAGGG
ATGGAGAACCAGGAGTAGCCACTAGAAAGTCCCAAATGCTAGAAAAGCAA
GAGGCTCCCAAGACCCAACAGAGATAACATTAGATGAAATATCCAACAGA
GGGGAGAGAGAACCTGTAGAGACCATATCCAGAGGTTCAACACAGCCCCC
TGGTAGAGGGATGGGACCACCCACCCATCTCAAAAATATTAACCCAGAAA
TGTAAATAAACAATTATAATTAAAAAATTCAAGGTCTAGATGTAAGTCTG
CAAGTAACTGGATAAGTGGTTTCAAAAAACGAATCAAGAGTTTAGTGAAT
ATCATTCAGTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_m18.b1 MSMg01no089_m18.b1 CHROMAT_FILE:
MSMg01no089_m18.b1 PHD_FILE: MSMg01no089_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:44 2005
         (303 letters)



>mm_chr12_38051445_38052148
          Length = 704

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattcaagtttctgttctcag-atattaatttcccaggatagaacttgaaatattaac 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaattcaagtttctgttctcagtatattaatttcccaggatagaacttgaaatattaac 356

                                                                       
Query: 60  tattcgttgcatgtgtgaaaacctctgttttttggagtctacttctcattgttcaaatag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tattcgttgcatgtgtgaaaacctctgttttttggagtctacttctcattgttcaaatag 296

                                                                       
Query: 120 ctgtgattaagtgtccgagagctacattgctcattacgacaacaaaggtttgtatatatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgtgattaagtgtccgagagctacattgctcattacgacaacaaaggtttgtatatatc 236

                                                                       
Query: 180 ccaattaaagagttagctttaaaaacccaggcttcatatttttaaaaagaaattaataat 239
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 235 ccaattaaagagttagctttaaaaacccaggcttcataattttgaaaagaaattaataat 176

                                                                       
Query: 240 tttatacaaaattactaagaaaatttggtagacattgttatgttctcactgtaacatgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttatacaaaattactaagaaaatttggtagacattgttatgttctcactgtaacatgtt 116

               
Query: 300 gtga 303
           ||||
Sbjct: 115 gtga 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 704
Length adjustment: 9
Effective length of query: 294
Effective length of database: 695
Effective search space:   204330
Effective search space used:   204330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)