Query= MSMg01no089_p17.b1 MSMg01no089_p17.b1 CHROMAT_FILE:
MSMg01no089_p17.b1 PHD_FILE: MSMg01no089_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:59 2005
(306 letters)
>mm_chr12_14889953_14890660
Length = 708
Score = 524 bits (271), Expect = e-153
Identities = 295/303 (97%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 6 gaattc-tcataatcatgatcattgtg-caacacactttagacaaatttatctatcactg 63
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 508 gaattcatcataatcatgatcattgtgaaaacacactttagacaaatttatctatcactg 449
Query: 64 gaattatgttcccacctcatatttataatgctagcatgattactcagtaaaaacaacaaa 123
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattatgttttcacctcatatttataatgctagcatgattactcagtaaaaacaacaaa 389
Query: 124 tatcaactttaaaagcagcacataattaaatacccaagttatttctccttactaagaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatcaactttaaaagcagcacataattaaatacccaagttatttctccttactaagaaaa 329
Query: 184 ccaacactacattgcctgactctctggtaatatgacttagtctcacatttagtgtggcta 243
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccaatgctacattgcctgattctctggtaatatgacttagtctcacatttagtgtggcta 269
Query: 244 accttagtgtactgtaaacttgcccccatgatggtaagctgatttgactagcttgtggct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accttagtgtactgtaaacttgcccccatgatggtaagctgatttgactagcttgtggct 209
Query: 304 ctc 306
|||
Sbjct: 208 ctc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 708
Length adjustment: 9
Effective length of query: 297
Effective length of database: 699
Effective search space: 207603
Effective search space used: 207603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_p17.g1 MSMg01no089_p17.g1 CHROMAT_FILE:
MSMg01no089_p17.g1 PHD_FILE: MSMg01no089_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:59 2005
(368 letters)
>mm_chr12_14737812_14738579
Length = 768
Score = 669 bits (346), Expect = 0.0
Identities = 358/362 (98%), Gaps = 1/362 (0%)
Strand = Plus / Plus
Query: 4 gagtgtggtaatttagtccttctgttttcatagtgcagtatctcccacatgatctgaaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gagtgtggtaatttagtccttctgttttcatagtgcagtatctcccacatgatctgaaat 263
Query: 64 tcactatgtagccaaacctggcctcaaattcatggcaatccctttgtatcaatatacaaa 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcactatgtagccaagcctggcctcaaattcatggcaatccctttgtatcaatatacaaa 323
Query: 124 gtgctagaactctatactgaaaattccactcataactttatttttgaaatgtgaattgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgctagaactctatactgaaaattccactcataactttatttttgaaatgtgaattgct 383
Query: 184 tttttccccaacttttctcctttaatacttaactattcatggatatttctttctacttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttccccaacttttctcctttaatacttaactattcatggatatttctttctacttta 443
Query: 244 agaagctgagtttccaggaggaagggaaacaggaaaagggtataacatttgaaatgtaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaagctgagtttccaggaggaagggaaacaggaaaagggtataacatttgaaatgtaaa 503
Query: 304 taaagaaaaatccaataaaaaaa-gctgaaacatgaatttatgcgacacaaattttaaat 362
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct: 504 taaagaaaaatccaataaaaaaaagctgaaacatgaatttatgtgagacaaattttaaat 563
Query: 363 ca 364
||
Sbjct: 564 ca 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
