BAC Information

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BAC

Clone NameMSMg01-090I19
Chromosome12 (Build37)
Map Location 50,489,249 - 50,489,570
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1
Downstream geneENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I19.T7 (MSMg01no090_i19.b1)MSMg01-090I19.TJ (MSMg01no090_i19.g1)
ACCAG308749AG308750
length793706
length of high quality
(start - end)
316 (115 - 430)288 (56 - 343)
definitionCHROMAT_FILE: MSMg01no090_i19.b1 PHD_FILE: MSMg01no090_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:44 2005CHROMAT_FILE: MSMg01no090_i19.g1 PHD_FILE: MSMg01no090_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCACACCAANNTTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCAGCTTTCCTTTCACTTTTGATAGTTA
ATACTGTGTTTCCTCCGTGGTAGTACATACTTATTCCATAAATAAAGCCC
ATAGCAGAAGCAAGCAATAGTCATCCTATTTTTCCTCCAATCTAAATGTA
GGCCTTTCCCTGTTTGTCTCTCAGCTATGCAATGAAGATTTCTTTGCCTA
AGCCCACATTCCCTGCCTCCCCCCTTACTTGTGTGTGTGTGTGTGTGTGT
GTGATTCACTTTTAAAAAACTGTTAGATTAAAAAAAAGACTTATATCTAA
GCAAAATCTATTCTCACATTAAGATGGATTATTATCACATCACCCCACTT
TGCCCATCTCTCTCTGTTCAATTTGATTCCAGCTTTTTAAAATTTCATAA
GATCTCTCTCCCCTCTTCCCCGCTTTCTCCCCTTCTCCCTTCTTCCTTTC
TCCAATTCACAACCCAGCCATCCCCATTTCCCAACATCAGCTATTTCAAT
TTTAAAATCAATTTTAGTCCACCTTGCTTCTCTACTGGGTTCACTGTTCC
TCTTCCCCTGAGTAACTCTCTATGTGTTTGATGAAAACATCCTTAGTACA
GATTATTTTTTCCCTGTATCCATTGTATATACGTGTTCAGCTTATTGTAT
AACTGCCTATCAATTTTCATTACTATACCATGGAACTTTATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGAATTTAAGAAAAACCCAAAGAAATAGCTCAATGAACCTAAA
AAGAATGAATTTGAAGACAATAAACTCCTGAGTGATCTCCAAGAAAAAAA
TTAAAACAAAACAAAAAAAGCCCACAAGTTTTGGTGAAAATAATGAAGAA
AATAATTAATTTGTAGAATTAAAAATAATTAGATAAAGGTATAGAAACAT
TGAAGAATAATCAAGGTGAAAAGAAGATGAAAGTCCCATTTACCCAATTA
GAATACTCCAGGGAAAGTCTTTTTTTTTTTTTTCCAGGTCTCTTATTTAA
CCCCCCTCCCCCCCTCATTTTTAATTAGATATTTTCTTTATTTACATTTC
AAATGTTATCCCCTCTCCTAGTTTCTCCTCAGAAAATCCCCTATCCCTTC
CCCTGTACCCCTGCTCACCAACCTACACACTCCTGCTTCCTGGCCCTGGA
AGTCCCCTATACTGGGGCATAGAACCTTCACAGAACCAAAGGCCCCTAAT
ACCTTTGATGGCCAACGAGGCCACACTCTGTTACATATGCAGCTAGAGCC
TTGAGTTCCACCATCCCACCATGTGTTTTTCTTTGTTTGGTGGTTTAGTC
CCCAGGAGTTCTGGAGACAGGGTTTAGTTCATATTGTTCTTTCTCCTATG
GGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i19.b1 MSMg01no090_i19.b1 CHROMAT_FILE:
MSMg01no090_i19.b1 PHD_FILE: MSMg01no090_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:44 2005
         (316 letters)



>mm_chr12_50489155_50489871
          Length = 717

 Score =  565 bits (292), Expect = e-165
 Identities = 310/322 (96%), Gaps = 12/322 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctttcctttc-acttttgatagttaatactgtgtttcctccgtggtagtaca 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaattcagctttcctttcaacttttgatagttaatactgtgtttcctccgtggtagtaca 357

                                                                       
Query: 64  tacttattccataaataaagcccatagcagaagcaagcaatagtcatcctatttttcctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tacttattccataaataaagcccatagcagaagcaagcaatagtcatcctatttttcctc 297

                                                                       
Query: 124 caatctaaatgtaggcctttccctgtttgtctctcagctatgcaatgaagatttctttgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caatctaaatgtaggcctttccctgtttgtctctcagctatgcaatgaagatttctttgc 237

                                                                       
Query: 184 ctaagcccacattccctgcctccccccttacttgtgtgtgtgtgt----------gtgtg 233
           |||||||||||||||||||||||||||||||||||||||||||||          |||||
Sbjct: 236 ctaagcccacattccctgcctccccccttacttgtgtgtgtgtgtctgtgtgtgtgtgtg 177

                                                                       
Query: 234 tgtgtgattcacttttaaaaaactgttagattaaaaaaaa-gacttatatctaagcaaaa 292
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 176 tgtgtgattcacttttaaaaaactgttagattaaaaaaaaagacttatatctaagcaaaa 117

                                 
Query: 293 tctattctcacattaagatgga 314
           ||||||||||||||||||||||
Sbjct: 116 tctattctcacattaagatgga 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)