BAC Information

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BAC

Clone NameMSMg01-090P16
Chromosome12 (Build37)
Map Location 65,398,186 - 65,398,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090P16.T7 (MSMg01no090_p16.b1)MSMg01-090P16.TJ (MSMg01no090_p16.g1)
ACCAG309055AG309056
length698698
length of high quality
(start - end)
641 (42 - 682)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no090_p16.b1 PHD_FILE: MSMg01no090_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:19 2005CHROMAT_FILE: MSMg01no090_p16.g1 PHD_FILE: MSMg01no090_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGCCCAGTGTCAGCTCAAGGACTACCTAGTGCATTGGTGAAGGCCAG
GAAGCAAAGTTCAATTTTGCTCAGGTATTTGGCAAGTCATTGCTTGGAGG
CACCTATAACAAAACAATACCGAAAGGAAGCACAGAGATCCATTCGCAAG
GACAAAATTGGAGCATACGTGCTGTGAAACGTCACAGTTCCAGGAGATTA
AGTTTCCATGAAACTCTTCGCCTCAGGACTGCATCCAGGTGTTTGGCCTG
TCATGTGTGTCACTACCAGAGTGCATATAGCACTATAGTCTATTTTCATA
GTTGAGCTGTACTTTCTGGACTCCATAGAGAGAAATGCACCAAAAAACTT
CTGGTGGTGTGCTGCAGTTCCTTGCCGATTCCCTGGACTTGGGTGGTTTG
GCAAAGAGATGTCAGCTAAGGCAGACTCATGTGTGGGACAGATGCTTATG
CTGAGGAAAGACTCAAGCTGAGGCAAGACCAGTGGAGGACATGTGATGTT
TGGAGGGTATAAACAGGACTCAACAGACAGTGATAGAGGCTGAGCTAAGC
TTGCTTATAGAGCTAGCTGTGCAGTGCTCGTGGGTCTCTTATCTTTGCTG
ATCATCAATTCACTGAGAGAGGCACAGCTGAGAACTTTTCCTGGCATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTGTGTGTTACATTGAATTTAAGTG
TCTGGAGCATGGTTTGCTTCCACCGACCCTGAGGCTACTCCTTGTGTAGA
GATAGTCATTAGAGAGTGGAGAACTGGCAGAATGCATCCTGATGGGGGAA
AGTTTTCTTGGGGAGACTCATTAGGCCCATTCTTAAACTGGAGATACAAA
GAGGTATACTAATACAGACTCAGGATCCTCTCCAAATGAAAGACCTCCGC
ATGCAATCCTGAGAATACTCAACCCTTTTATGTAGCCCAAACAGACAGTA
ACAGGAACCCTGGTATCATTAGAGACCATACAGGCAAAAGAATATCACCA
AGGGGCTAAAATTAAACTCCCTTTGTAATCAGGATTCATAAATACAGACT
AAGATCCACATGTTAGACCCCAACTGAGTGACTGATGCTAAAGTAACAAA
CTATAACAAGTCCCAGAGTCTCCTAACTCAGAATCTAAGTAAATAATTTC
AATTTGAATAAGAAAAGAAAATTAGCTGATGTCAAAATCAGGTTGAACCA
GATGTTGGAGTCATTTGAAATGACTTTAAAGGAGCTATCATGAAACTGCT
TCAACAATCAATGACAAATTCTTTTGAGAACAATGAAAAAGTCCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_p16.g1 MSMg01no090_p16.g1 CHROMAT_FILE:
MSMg01no090_p16.g1 PHD_FILE: MSMg01no090_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:19 2005
         (291 letters)



>mm_chr12_65397986_65398676
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgtgtgttacattgaatttaagtgtctggagcatggtttgcttccaccgaccctgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 aactgtgtgttacattgaatttaagtgtctggagcatggtttgcttccaatgaccctgag 260

                                                                       
Query: 61  gctactccttgtgtagagatagtcattagagagtggagaactggcagaatgcatcctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctactccttgtgtagagatagtcattagagagtggagaactggcagaatgcatcctgat 320

                                                                       
Query: 121 gggggaaagttttcttggggagactcattaggcccattcttaaactggagatacaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggaaagttttcttggggagactcattaggcccattcttaaactggagatacaaagag 380

                                                                       
Query: 181 gtatactaatacagactcaggatcctctccaaatgaaagacctccgcatgcaatcctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatactaatacagactcaggatcctctccaaatgaaagacctccgcatgcaatcctgag 440

                                                              
Query: 241 aatactcaacccttttatgtagcccaaacagacagtaacaggaaccctggt 291
           ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aatactcaacccttttatgtagcccaaacagccagtaacaggaaccctggt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)