BAC Information

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BAC

Clone NameMSMg01-091F13
Chromosome12 (Build37)
Map Location 62,615,919 - 62,616,258
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F13.T7 (MSMg01no091_f13.b1)MSMg01-091F13.TJ (MSMg01no091_f13.g1)
ACCAG309322AG309323
length719708
length of high quality
(start - end)
383 (46 - 428)321 (78 - 398)
definitionCHROMAT_FILE: MSMg01no091_f13.b1 PHD_FILE: MSMg01no091_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:49 2005CHROMAT_FILE: MSMg01no091_f13.g1 PHD_FILE: MSMg01no091_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTCCTAGGCAAATGGTTGGAACTAGAAAATATCATCCTG
AGTGAGGTAACCCAATCTTATGATATGTACTCACTGATAAGTAGATATTA
GACCAAAAGCTCCAAATACTCAAGATACAATTCACAGACTAAAGAAGGAG
GAAAACCAAAGTGTGGGTGCATTAGTCCTTCTTAGACAGAAAACAAAATA
CTCACAGGAGCAAATATGGAGATAAAGAGTAGAACAAAGACTGAAGGAAA
AGCCATCCAGAGACTGCTCCACCTGGGAATTTATCCCATATACAGTTACA
AAACTCAGACACTATTGTGGATGCCAAGAGGTGCATGCTGACAGGAGCCC
GATATAGTTGTCTCCTGAGAGGCCCTACCAGCGCAGGGTGATCTAGGGGA
ATCAAGGTCAGGGAGATGTGAGTGGGTGGGTGAGTGTAGTACACATCCCC
CAACACTATGTATTGCTCCCACCGTACCACCATCCCCATCTTATCTTTTC
TCCCCCCTCCTCACCTAAATTATCCCCCCTCTTCTTCCCTTCCCCCCTTC
TCTTTATTCTTTTCCCCTCCCTATCCCCTCTATTCATTTTACCCCCCCCT
TCCTTATCCCATAACATTTTCCCTCCTCCCTTTCTTTACCACCCCTCCTC
CCCCTCTTATATTTTCTTT
TCATCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTCAGGAACACTAAAATGAC
GCAGTCAATGAAGTGCTTCTTACCCCCCATCATGATTTGAGACCTACACT
ACCCCCACCCCAAACACTTAAAAACTCCAGGTCCTAGTGAGAAATCCTGA
CTGATGAAACAATATGAATTAACAGCTCATTACAAAGAACACCTAAGCTG
TCCCCTGGCTTCCCTATGCACGTGCACACACACACACACACACACACATA
CACACACACACACACACACACTCATACATGCATATATGTGCACATACTCC
TTACACACAAGTATCCCATTCATTCGCATTCCGAAGTATTTGAATTTGCA
TATACAGACATCTGATGTACAGGATAGAAATGAAATCTAATATCGAGGAC
AGAAATAATTCAACCCAGGCTGACGTTGCATTGTTGTATGAGACCCCTGA
GCGTATTCCCCCTCAGTCCGACAAGAATTTGAATCCACTCCAGGGCCTTA
AAGTCTCCCCCTATGAACTCTGTTGTTGCCGCTCTCACCCATACCTCCAT
TAATATTGCACCGGAATTCCCTTCTGACATGCCGCATTCACTGTGGATCC
GTGCGCCTCGTCCCATATCTTTCCCCCATGCCTGCACAATTCTCTCTACG
CCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f13.g1 MSMg01no091_f13.g1 CHROMAT_FILE:
MSMg01no091_f13.g1 PHD_FILE: MSMg01no091_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:50 2005
         (321 letters)



>mm_chr12_62615861_62616582
          Length = 722

 Score =  513 bits (265), Expect = e-150
 Identities = 312/347 (89%), Gaps = 33/347 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcaggaacactaaaatgacgcagtcaatgaagtgcttcttaccccc-------cat 53
           |||||||||||||||||||||||||||||||||||||||||       ||       |||
Sbjct: 398 tatttcaggaacactaaaatgacgcagtcaatgaagtgctt-------ccaaggaagcat 346

                                                                       
Query: 54  catgatttgagacctacactacccccaccccaaacacttaaaaactccaggtcctagtga 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 catgatttgagacctacactacccccaccccaaacacttaaaaactccaggtcctagtga 286

                                                                       
Query: 114 gaaatcctgactgatgaaacaa-tatgaattaacagctcattacaaagaacacctaagct 172
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 285 gaaatcctgactgatgaaacaattatgaattaacagctcattagaaagaacacctaagct 226

                                                                       
Query: 173 gtcccctggcttccctatgcacgtgcacacacacacacacacacacacatacacacac-- 230
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  
Sbjct: 225 gtcccctggcttccctatgcacgtgcacacacacacacacacacacacacacacacacac 166

                                                                       
Query: 231 ----------------acacacacacacactcatacatgcatatatgtgcacatactcct 274
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acacacacacacacatacacacacacacactcatacatgcatatatgtgcacatactcct 106

                                                          
Query: 275 tacacacaagtatcccattcattcgcattccgaagtatttgaatttg 321
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tacacacaagtatcccattcattcgcattccgaagtatttgaatttg 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)