BAC Information

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BAC

Clone NameMSMg01-091H23
Chromosome12 (Build37)
Map Location 61,559,835 - 61,560,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H23.T7 (MSMg01no091_h23.b1)MSMg01-091H23.TJ (MSMg01no091_h23.g1)
ACCAG309432AG309433
length713719
length of high quality
(start - end)
466 (69 - 534)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no091_h23.b1 PHD_FILE: MSMg01no091_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:02 2005CHROMAT_FILE: MSMg01no091_h23.g1 PHD_FILE: MSMg01no091_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGCGCGGAATTCT
TTGTTTATCCCTGAACCCAATTTTTAATGGGATTATTTGATTTTCTGGAT
TCCACCTTCTTGACTTCTTTATATATATTGGATATTAGTCCCCTATCTAA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGACGGTGTCTTTTGTCTTGCAGAAGCTTTGCAATTTTATGAAGTCC
CATGTGTCGATTCTGGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTGTCTTTATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGCTTTTATGTGGAGTTCCTTAATCCACTTA
GATTTGACCTTACCACAAGGAGATAGAAATGGATCAATTCGCATTCTTCT
ACATGATAACAACCAGTTGTGCCAGAACCACTTGTTGAAAATGTTGTCTT
TTTTCCACTGAATGGTTTTAGCTCCCTTGTCAAAGATCAAGCGACCATAG
GTGTGTGGGTTCAACTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTGG
TCTGTCACTATACCAGCACCATGCAGTTTTTATCACAATTGCTCTGCAAT
ACAGCTTTAGGTCAGGCATGGTGATTCCCCCAGAGGATCTTTTATCCTTG
ACAAGAGTTTCTG
NCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAGGAGTAGACATAAAACATTAAT
TTTCTAATTCAAACCAATTAATATCAAACAGCATAATTTCTATGAAATTA
TACTATCATACCACCAAAGATTTGTTGAAAATAATTACATTGCTCTATAC
TTCATGATTCATTTTCCAAGATCTAACATATATTTATTTTGTTTTGTTTT
GCTTTTTATTAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAA
GTCCCCCACCCACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGGCG
TTCCCCTGTACTGAGGCAGATAAAGTTTGCATGACCAATGGGCCTCTCTT
TCCACTGATGGCAGATTAGGCCATCTTCTGATACATATGCAGCTAGAGAC
ATGAGCTCTGGGGGGTACTGGGTAGTTCATATCGTTGCAGATCCCTTTAG
CTCCTTGGTTACTTTCTCTAGCTCCTCCATTGCGGGTCCTGTGATCCATC
CAATAGCTGACTGTGGGCATCCATTTCTGTGTTTGCTAGGCCCTGGCATA
GTCTCACAAGAGACAGCTATATCTAGGTCCTTTCAGCAAAATCTTGCTAG
CGTATGCAATGCTGTCAGCCTTTGCAGGCTGATTATGGGACGGATCCCCA
AAAGCGGTAGTCTCTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h23.g1 MSMg01no091_h23.g1 CHROMAT_FILE:
MSMg01no091_h23.g1 PHD_FILE: MSMg01no091_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:02 2005
         (338 letters)



>mm_chr12_61559635_61560372
          Length = 738

 Score =  518 bits (268), Expect = e-151
 Identities = 315/338 (93%), Gaps = 12/338 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggagtagacataaaacattaattttctaattcaaaccaattaatatcaaacagcat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tctaggagtagacataaaacattaattttctaattcaaaacaattaatatcaaacagcat 260

                                                                       
Query: 61  aatttctatgaaattatactatcataccaccaaagatttgttgaaaataattacattgct 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttctgtgaaattatactatcataccaccaaagatttgttgaaaataattacattgct 320

                                                                       
Query: 121 ctatacttcatgattcattttccaagatctaacatatatttattttgttttgttttgctt 180
           | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct: 321 ccatacttcatgattcattttctaagttctaacatatatttattttgttttgttttgttt 380

                                                                       
Query: 181 tttattaggtatttatttcatttacatttccaatgctatcccaaaagtcccccacccact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 381 tttattaggtatttatttcatttacatctccaatgctatcccaaaagtcccccacccacg 440

                                                                       
Query: 241 cccccacccacccactcccacttcttggccctggcgttcccctgtactgaggcagataaa 300
           |            |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 441 c------------actcccacttcttggccctggcgttctcctgaactgaggcagataaa 488

                                                 
Query: 301 gtttgcatgaccaatgggcctctctttccactgatggc 338
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 gtttgcacgaccaatgggcctctctttccactgatggc 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)