BAC Information

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BAC

Clone NameMSMg01-092A10
Chromosome12 (Build37)
Map Location 51,387,569 - 51,387,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517, LOC636070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A10.T7 (MSMg01no092_a10.b1)MSMg01-092A10.TJ (MSMg01no092_a10.g1)
ACCAG309814AG309815
length717716
length of high quality
(start - end)
348 (65 - 412)227 (69 - 295)
definitionCHROMAT_FILE: MSMg01no092_a10.b1 PHD_FILE: MSMg01no092_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:44 2005CHROMAT_FILE: MSMg01no092_a10.g1 PHD_FILE: MSMg01no092_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCT
TTGTTTGCCCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAG
TCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAACTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTA
GATTTGACCTTAGTACAAGGAGATAACTATGGATCGATTCGCATTCCTCT
ATCTGATAACATCCAGTTGTGCCAGCACTCTTTGTTGAAAATGCTGTCTT
CCTTCCTCTGGATGGTTTTAGCTCCCTTGTCGAAAATCAAGTGTCCACAT
TTGTGTGGTTTCATTTTCTGGGGCTTCTCTTTTTATTCCATTGGTCTTCT
CTTTTGTCTCTATCCCACCTCCATCGTCTTCTTTACCATAACCGGCTCTG
CATTCCTCTTTTTATATCTCGGTATGGTGATTCCCCCCACAAGTGCCTTT
TATCCCTGCATAAAAGT
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGTGTGCTTTTGGTGGTAATAGCAAGGAAT
ATAGTAGGTGCAGGATGCTACAATTGAAGACACTATCAACAAGATGGGAT
TGCTAAAGGTGAGATTTGGAGAGTGAATTGATCAGAATAGTACCAGCAAA
TGTATGCAAAATAGGGAAAGGAGAATGATAGGGAAACTTGGGATGGGGAA
ACCTTTGTTATTATTCTCTCCTTTATAAAGGTTGAATAATACAACTAAGT
AAAAATAAAAAAGTTAAATATTGTATTTTAATGAATTATTTGAAAATTCC
ATATATGAATGCTATGTATTACTATCAAATTCCTCCCAACTCCTCCCAAT
CTACTCCCCAACTCTTTCCATCTCACTGTCCTTTATAAAAACATTGATTC
AAGTAATGTGCTGCCCATATATTAATGGGTATGGAGCCATCTGCTGTAGT
GTGGTCCTCAAAACACGGCCATGACCTTTAGAGAAACTTTACTCTTCTTC
CCCTAGAATGATCAGTACCTCATCTAGGGTAGGTGCCAACGAGCCACTTT
CCATAGTATCTTTCCCAATTTTTAATATCTCAATCCTTTCCCAAGCCAAA
CCTTCTTTTAATTTTCCTTTGTCCCGCCAAAATTTGCTGACTTGAACTCC
CCAAAACACCAATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a10.g1 MSMg01no092_a10.g1 CHROMAT_FILE:
MSMg01no092_a10.g1 PHD_FILE: MSMg01no092_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:44 2005
         (227 letters)



>mm_chr12_51387369_51387995
          Length = 627

 Score =  439 bits (227), Expect = e-128
 Identities = 227/227 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtgcttttggtggtaatagcaaggaatatagtaggtgcaggatgctacaattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actgtgtgcttttggtggtaatagcaaggaatatagtaggtgcaggatgctacaattgaa 368

                                                                       
Query: 61  gacactatcaacaagatgggattgctaaaggtgagatttggagagtgaattgatcagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gacactatcaacaagatgggattgctaaaggtgagatttggagagtgaattgatcagaat 308

                                                                       
Query: 121 agtaccagcaaatgtatgcaaaatagggaaaggagaatgatagggaaacttgggatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agtaccagcaaatgtatgcaaaatagggaaaggagaatgatagggaaacttgggatgggg 248

                                                          
Query: 181 aaacctttgttattattctctcctttataaaggttgaataatacaac 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaacctttgttattattctctcctttataaaggttgaataatacaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)