BAC Information

Click to search

BAC

Clone NameMSMg01-092C22
Chromosome12 (Build37)
Map Location 3,259,828 - 3,260,157
singlet/doubletsinglet
Overlap geneRab10
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik
Downstream geneKif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092C22.T7 (MSMg01no092_c22.b1)MSMg01-092C22.TJ (MSMg01no092_c22.g1)
ACCAG309933AG309934
length701688
length of high quality
(start - end)
194 (125 - 318)330 (73 - 402)
definitionCHROMAT_FILE: MSMg01no092_c22.b1 PHD_FILE: MSMg01no092_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:57 2005CHROMAT_FILE: MSMg01no092_c22.g1 PHD_FILE: MSMg01no092_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCGCTATACGACTCCTATATCCAGAGGATCCGCGGAA
TTCACTCTGTATACCAGGCTAGCCCTGAACTCACAGAGATCTGCTATCTC
CCAAGAACTGGAATTATAGGTCTGTACCACCATTTGGCTTGGATTCAAGG
TTTTATACTTATGAAGCAAGGACTTTACTGAGTACATTATCTTCCCAGTC
TGTCTCTGTCTCTTGAGACAGCATCTCACTGGAACTCACTATGCAGGCCA
AAATGGCCTTGAACTCCCAGAGCTCCCCCTCTGCTGCTCCAGTGCTAGAA
TTGAAGGTGTGTGCTACTTTCTTGCCTGGCCTTTTATGTTTTTGAGCACT
CACAAAATTTTTTTTTACCCCCTCCACCACATTCTGAAATGTCAGTTCAT
GACTTTTGGTGTCATTCCACAACAATAAAAACAAAATACAGTACTGCTGT
TTTATTCTCTCTTATACAGCACTAATGCTATAACTCTCCCTGTTACTTCC
TGCCCTTACCTCTCATTGAACTCTTAAAAACAGTCTTGATCTAAGCTTCT
GTAAATCCTGGATACCCGATAGGTATTCGATTTACAGCATATTTTTTTCT
GCGTCATCTTTTCTTCCCATACCTTACCCATTAACTTGACTTTTTAATAC
TCTCCTATCTCCACTGTTCTCCCCCATTCCTCCCCTCCTGGCCAGACCTC
T
CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGGGACTGGAAAGATAGCTCAGCTGT
TTAGAGCACTGACTGCTCTCCCAGAGGTCCTGAGTTCAATTCCCAACAAC
CATGGTGACTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTG
TGTCTAAAGAGAGCTGCGGTGAACTCATATACATAAAATAAATAAATCTT
TTTAAAAAAATTCCTGAATTCATGGCTTTAAGTATGTCTAACAAGATTTC
TACCACTGAGATATATCCCATCCACTGCTCCCCTCAGCAAACATCTATAA
AGACTGTCTGTAGTTGCTGTTTCTCCACAGATCTTTGTTAATTAACTCAG
AGGGGTGAGCAGGCGCGCCCTTGCTGGGGATTGACCTAAGCAGGATTACA
CTTGGTAAAGCACATGCTCTAAGTACTGAGCTATATACTGTATTCCATGC
CCCTCAATCAACTCTAGTCATATTCCTTTTATTTAATCCAGAGAGACTGT
GTTTCAAAAGAACACCAATAATCTTGTCTTCTATTCCGCAGCCACTTTTT
TCTCCATTATCTCAGTCACTAAGTAGGCTCACAAACAGTTGGGCATGTCA
TCCTAGGATTATAGATACTTGACTATGCACCTTACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_c22.g1 MSMg01no092_c22.g1 CHROMAT_FILE:
MSMg01no092_c22.g1 PHD_FILE: MSMg01no092_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:57 2005
         (330 letters)



>mm_chr12_3259628_3260357
          Length = 730

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggactggaaagatagctcagctgtttagagcactgactgctctcccagaggtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgggactggaaagatagctcagctgtttagagcactgactgctctcccagaggtcctg 260

                                                                       
Query: 61  agttcaattcccaacaaccatggtgactcacaaccatctgtaatgggatctgatgccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcaattcccaacaaccatggtgactcacaaccatctgtaatgggatctgatgccctc 320

                                                                       
Query: 121 ttctggtgtgtctaaagagagctgcggtgaactcatatacataaaataaataaatctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctggtgtgtctaaagagagctgcggtgaactcatatacataaaataaataaatctttt 380

                                                                       
Query: 181 taaaaaaattcctgaattcatggctttaagtatgtctaacaagatttctaccactgagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaaaattcctgaattcatggctttaagtatgtctaacaagatttctaccactgagat 440

                                                                       
Query: 241 atatcccatccactgctcccctcagcaaacatctataaagactgtctgtagttgctgttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatcccacccactgctcccctcagcaaacatctataaagactgtctgtagttgctgttt 500

                                         
Query: 301 ctccacagatctttgttaattaactcagag 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ctccacagatctttgttaattaactcagag 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)