BAC Information

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BAC

Clone NameMSMg01-093C03
Chromosome12 (Build37)
Map Location 79,222,000 - 79,222,278
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093C03.T7 (MSMg01no093_c03.b1)MSMg01-093C03.TJ (MSMg01no093_c03.g1)
ACCAG310654AG310655
length1,0991,206
length of high quality
(start - end)
188 (11 - 198)281 (111 - 391)
definitionCHROMAT_FILE: MSMg01no093_c03.b1 PHD_FILE: MSMg01no093_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:21 2005CHROMAT_FILE: MSMg01no093_c03.g1 PHD_FILE: MSMg01no093_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAACTATCCCGGTTCCCTTTCACAAACTTCCTATCCCACCCCTCCTC
CCCGTTGCTTCTATGAGGGTACTCTCCCACTCACTCCTTCCTACCTCACC
ACCTTAGCATTCCCCCATGCTGGGGCATCGAGCCTTCACAGGACCACTCC
CTCTCATTGATGCCAGATAAGGCCATCCTCTGGAATTCAGAAAGTTTTAC
ACACAAGTGTTTGGTACTAGGAATGTATTTCAGTGGGTAGAGTACTTGCC
TAGTAAGCACATGTCCTGAGTTTGAAGCTCAGGACTGCTTTTTTTGAGCA
TAGTGGTAACTGCCTAAAATCTCAGTACTCAGGACGCCCATTTTTTATCA
CCCCCCCTTCAAGGCCATCTTTGCCTACCTAAAACTTCTGAGGCCCACTT
GATCTAGAGTTCTTCACATTAGGCTGTGTGCGCGTGTGTGTGCTTGCGAT
GTTTCCTATTATTTCCACTCTTTTTTTTATTTTATCCTTCTCTTTTATCT
TCTTCTTTCTTCTCATTACCTCTACCTTCTTTTCTTACTTCTTTTTTTTT
TATCTATCTTTACTTATTTTTTTATTTTTCATCCTTACTTTTTTTTTATT
CCCTTCTTCCTTTTTCTCTTTTATTTTTTATTTATTCCTATCTATTCTTT
AATTTTTCCTGTTATTTATTCTTTCTTTTTTTTTTTTTTCTTATCTTTTT
TTCTCCCTTTCTTTCTTCTTTCTTCTATTTTTATCTTTTTATTATATCTA
TTTACTTTCTCTCTTTTTCTTTTTTTATTTTCTTTCTTTATCCTTTTTCT
CTCCTTGTTTTTTTTTTATTCTTTTCTCTTCTTTCATTTTACATATTCTC
TTCTCCTTTCCTTTATATCTCTATTTTTTTATTATTCTTCTAATTTTCCT
ATTTTTTTTATTCTCTTTTTCTTTATTTTTTTTTCTTTATCTTATTTTTT
TGCCTTTTTCCCTTTTTATTTATTTACTATTCTTTTTTTCTTTTATATTC
TTTTTTTATTCCTCTTTCTAATTATTATTATTTATATTTTTCTTTTCCTT
TTCTATTCCTTTTATCTTTTACATATTTTTTATCTTTACATTTTTTTTT
NTCCGCAAGGAGGCTGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTTAAAACCACTTGTTGGATGAAACCATAATTGTGGC
CCCCTTTAATTTTTGGATCTGAATCTCCATTCTTTTTTCACTCTTTTGTG
GGATTTGTAGACCAAACCACGCATATCCTTTCCAAAATGAGTTGGTTCTT
TAAAAAACAATCCAGAATGCAGCCAAACCCATCTGTTTCCTTTCCTACAC
CGACTTATTTGTTGTAATAAAGCCCCCAACAGTCCTCAAAGAGATGCAGT
TATAGGAAAGAAAACTGATTATAAATGAAAGATTTTAGGGTCGTTGAGAT
TTATTTCCCTTATATGCAAAGTGTGAAACAGCCTGTGATTTTTTGTTTAT
AACGCATTGCCCACATCTGACAGGCTAATCATGCAGTCCGCCCATTATGT
CCCCCCCCCCCCATAGGATTCCCACTACAGAAGGACTAATAATCAGGAGC
TTATCATATTGAGGCGGAAATAATGCTGTTTGCACAGTCTTTTAACTGAT
AATTGCTCTGTAGCTCGCCTGCGAGTCTTATGACTCTCAAAAACTATTGA
TTTGAACTCCAATGTGTATAAGGATTTATTAACATTTACCTTGTTTCCTG
TGAATGCCTTCTTGTCTTTATTTCTTTCTATCCTGAATCTTGTGTGTTCG
TTTTTTTATTTGCTTTACTTTTTATTTTACCTCTTTTTTTTATCTTCTAT
ATTCTATCCTCTTCAATTTCTTTTTTTTTTATTTTCCTTCATTATTTTTC
ACCCTTTTTTCTCTTTTCTTTTCACTTATTTCCCTATTTTTTCTCTTTCT
CTCTTTTATTCTTTTTTATATTTTTCCTCATTTTTTTTACTTTTTTTTTT
TTTTTTATACCTTTTACTTTTTTCTTTTTGTTTTTCTTTCTTATTTTTTC
TTAATTTTATTTTATTTTCCTTCATTATCATCTTCATATCATCTTTTTTT
TTTTATAATTCATTTTTATTTTTTTTTTTTTTAATTTTTCCTTATCTATA
ATCTATATTTTATCTTTTTATATATTCATTTCTTTTTTTATCCTCTGATT
ACTATTCTCTATTCCTCTTCTTATTTTCTTTTCTTATTCTTTTATTCATT
ATTTTTTCCTCTATTTTTTTCTCTCATTCATTATCTTTATTTTAACTACT
TCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_c03.g1 MSMg01no093_c03.g1 CHROMAT_FILE:
MSMg01no093_c03.g1 PHD_FILE: MSMg01no093_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:21 2005
         (281 letters)



>mm_chr12_79221800_79222480
          Length = 681

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggatctgaatctccattcttttttcactcttttgtgggatttgtagaccaaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttggatctgaatctccattcttttttcactcttttgtgggatttgtagaccaaaccac 420

                                                                       
Query: 61  gcatatcctttccaaaatgagttggttctttaaaaaacaatccagaatgcagccaaaccc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcatatactttccaaaatgagttggttctttaaaaaacaatccagaatgcagccaaaccc 360

                                                                       
Query: 121 atctgtttcctttcctacaccgacttatttgttgtaataaagcccccaacagtcctcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atctgtttcctttcctacaccgacttatttgttgtaataaagcccccaacagtcctcaaa 300

                                                                       
Query: 181 gagatgcagttataggaaagaaaactgattataaatgaaagattttagggtcgttgagat 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gagatgcagttataagaaagaaaactgattataaatgaaagattttagggtcgttgagat 240

                                                  
Query: 241 ttatttcccttatatgcaaagtgtgaaacagcctgtgat 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttatttcccttatatgcaaagtgtgaaacagcctgtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)