BAC Information

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BAC

Clone NameMSMg01-094B14
Chromosome12 (Build37)
Map Location 80,405,936 - 80,406,233
singlet/doubletsinglet
Overlap geneRad51l1
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B14.T7 (MSMg01no094_b14.b1)MSMg01-094B14.TJ (MSMg01no094_b14.g1)
ACCAG311363AG311364
length1,379777
length of high quality
(start - end)
---297 (130 - 426)
definitionCHROMAT_FILE: MSMg01no094_b14.b1 PHD_FILE: MSMg01no094_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005CHROMAT_FILE: MSMg01no094_b14.g1 PHD_FILE: MSMg01no094_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNN
NNNNNNCCCTTTTNNNNNNNAAGGACTACTGTGTGGTTTGAGATGTGGGA
GAANNTCTTAGAGAGNCGNNNTCTTTAAGGAGGGGNNNNTCTTTCGGGTG
TGTAGGTAGGAGAGAGGNGCACATTGGAGGAGTTGTTCTCTTTTCTCTCT
CAAGAGAAGGAAGGGAGGGGGGTGAGAGCTGTNNTTNNTTTTCATCGTCG
TTGTGATTGAATATGATGGCTGTTTTTTTTATCCCCTCCTCTACTAGATT
GGGGTGAGTGGGGAGTATATGGCTTGGTTGTGTGACGTAGTGTTGTGAGC
TCGTAGGGATATAATGTGGTGGTGCGTTTATTGTGAGTGTGAGATGGTAT
ATTGATGAGGTATATGTTTTTGATTGTTTGAGTATAGCTTCTTATGTTAT
TATATATTGGAGGTGGGAGGGTGGTATGCTGTGTTGTTATTATTGATAAG
TAAGTATAGTATGGTAGCATATATAAGTGAAGAGAGGTAGGAATATATGG
ATTTTTAGTAATGGTTGGGGAGAGGATGAGGGATGGGTTGTTTGATGTGT
TGGGAGTTGTGTTACGAGTGGGTTGATTCTTGTTTTATATTTTTGATAAT
TGCGCGTGTGACCGTGAATATCTTGTTTGAGTGGTTATGGTGTGGGGTGG
TATTTTTTTGTTTTTTATCTGCCGCCCCCCCGCGCCTCGCGGCGCATTTG
GAGGTTCATTTTTCGTATTAGGTGGGTATGGGGGNGTGGTGTTGGTGTGG
GTTATGTAGTTAACACAAAATATATAAAAATTATAATCTGCTGTGGTGTG
TAGGGGTGGGAGGGGGTGGGGTGCTGCTCTTTTGAATTGTTATGTTATGT
AAGGNTATGGATGTCTAGTTTGTTAGAATGAGATATGTCGTCGATGTAGA
TGTGGAGAGTGTTGATTCGCATATGAGTATGAGTGGCATATGTTGAGATG
ACGGGTTGGTGGTGAGGGTATGTGATGGACAGTGTTATTATGTATGAGGT
GTGTTTATATAGTTATGTGTATGTTGGCGGTTTATAGACAAATAGTTGTG
TGTATATGATGCTACTGTTACGCTATAAGTTCGTGGTAGCTCTATTTGCG
AGATGTAATAGGTGGTGATGTAATTATGTTGATGGCGTTAGTGTGTGGTA
GGGTTTGGTTATTCTGGTGTATGTGGGGTGTTAGAGTACGATGAGAGAGA
GTGGTGGGATGCAGATAGATATGGGAGCTAANTTGGTACGGAGTGACAGA
GTAATAATGTATGGTGAAGATAAATGAGTGACTGTGTTATGTGGNCGGTG
TGTGTGTGGTGTATTGTATAGACGCGCTN
NNTTTCCCCNNNNNNNNTTTTTNNTCCCTCCTTCTCCTTTTCCCCCCCCT
TTTTTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCCAGAAAAGTTTGGAAG
CAAAGTCCTAGGAGCAGACATGTTGCATGCTAGTGAGTGTGAGTGTGTGT
GTGAGTGTGTGTGCACATGCGCACGGCACATGCGTCATGAGGTGCTGGGT
TCTGAACCCATGGCTTCAAGCATTTTATGCAATGTCTGGTTCACTGAGCT
ATATTCCAGCAGTTTCTTACAGTTCTCATAATCTTAATTTAAATGATTTT
TTCTTAAAGATAGGAATCCTGTCTTAGGGAATATTTTATTTCTTATATTC
CTAGAGAGATTTAAAGACTGCTATGTCTAGTAGATGCCTATTAAATAAAT
AGTCGTCCCCTGGCTGGCAGCGCGGAGGTCGTACGATGCCTGCATTTACT
GTAAAAGACGTTAACCAGCAGGAGTTCGTTCGAGTTCTGGCAGCCTTCCT
CAATAAGTCCGCGAAAGCTGATAGTCTCCGACTGGGTGGACACAGTCAAT
CTGCCCCCCACCTAAAGAGCTTGCCCCCTATGATGAGAACTGCCTTTACA
CCACCATTTGCTTCCCCCATTCCCGCCCTTGCTACCCCCAATTTGCCGCC
TGCCTTTGCTTTCCTTGCACTTACTATCCATGTACCTTCCCCTTATTTCT
TTTTGTCAAACCTCCCCTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b14.g1 MSMg01no094_b14.g1 CHROMAT_FILE:
MSMg01no094_b14.g1 PHD_FILE: MSMg01no094_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:36 2005
         (297 letters)



>mm_chr12_80405736_80406433
          Length = 698

 Score =  522 bits (270), Expect = e-153
 Identities = 291/298 (97%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgccagaaaagtttggaagcaaagtcctaggagcagacatgttgcatgctagtgagtg 60
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 201 cttgccagaaaagtttggaagcaaagttctaggagcagacatgttgcatgttagtgagtg 260

                                                                       
Query: 61  tgagtgtgtgtgtgagtgtgtgtgcacatgcgcacggcacatgcgtcatgaggtgctggg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgagtgtgtgtgtgagtgtgtgtgcacatgcacacggcacatgcgtcatgaggtgctggg 320

                                                                       
Query: 121 ttctgaacccatggcttcaagcattttatgcaatgtctggttcactgagctatattccag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgaacccatggcttcaagcattttatgcaatgtctggttcactgagctatattccag 380

                                                                       
Query: 181 cagtttcttacagttctcataatcttaatttaaatgatttttt-cttaaagataggaatc 239
           |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct: 381 cagtttcttacagttctcataatcataatttaaatgatttttttcttaaagataggaacc 440

                                                                     
Query: 240 ctgtcttagggaatattttatttcttatattcctagagagatttaaagactgctatgt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcttagggaatattttatttcttatattcctagagagatttaaagactgctatgt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)