BAC Information

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BAC

Clone NameMSMg01-094E15
Chromosome12 (Build37)
Map Location 49,268,833 - 49,269,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E15.T7 (MSMg01no094_e15.b1)MSMg01-094E15.TJ (MSMg01no094_e15.g1)
ACCAG311501AG311502
length768663
length of high quality
(start - end)
270 (99 - 368)436 (104 - 539)
definitionCHROMAT_FILE: MSMg01no094_e15.b1 PHD_FILE: MSMg01no094_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:52 2005CHROMAT_FILE: MSMg01no094_e15.g1 PHD_FILE: MSMg01no094_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCCCNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCTATT
TNNCTTTTCTATAATTGCGGCGCTAATACGACTCCTATTCGAGAGGACCG
CGGATTCTTTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCTACCTTCTTGAGCCCTTATATATATTGAATATTAGTCCC
TTGTCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTTTTGGTGGCCT
TTTGGTCTTATTAACAGTGTCTTTTGTTTTTTTGTTTTTTTTTTTTGTTT
TGCTTTTTTTTACATTAAAGAACATGTTTATTTCATTATCTGCTTGGATT
TATTTTTGTTTTATAACAAATATATATAAGTAAATAACTGTTTTGATTTA
ATCTTTCTGTTTCTTTATGTCTCGCTCTTCCGCCTCTATTCCTAAATTTT
ATATTTCTGATTTATACCACCCTTACATAGACCCAATAAAGGTCATGTAA
CAATTTTTTAATATTACTCACACAGTTATATGTCGGGATTCATTCAATTT
CCTTATCCAATTTTATCAGATGTTTCTATGAAATGACATTAAACCTTTAA
TGCCTTTTGTGTCTCCCCCTATCCGTCCCCTTTCACTGATCTTTTTTCAG
GAGGCCCCTTCACAAATTGTTGTTTTTAAACCATTTCCTCACTTTTAGCT
CTCTGACCTTTTTCCTTGTTTTCGCTCATATTTTATATTGTTTTTTACAT
TCCCACCTTCATATCCCT
GGCGGCCGCCTGTCCAACAAATTTAGGTGAACTATAGAATTGCCCGAGAA
ATTCAGTAAAACACAACTAACAAACACTGATTAAATGTTAACTTATTGTG
CAAATCTCTTCTGTGGAAAAGAATAAGTTCTTCTTAAGGGATCCTAACTA
AGAAGGATCATGATTAAGCAAATATTTATTTCAAACTAATTATCAATAAG
AGAGAGAGAGGCAGTAAGATAAGTCTTAAAATATGTTATAAAATGGGTAG
ATGAAATTAAGAAATATATCAATGTGTTATAGTTCAAGAAAAGTTATAGT
TTTGATATGCTATTTAAAAATAGATATCATTTATGTCTGATTAGGTTGTT
ATGTAGTAGTATTACAATTCTTTGAGAAAATAGAATATTGGACTACACAT
TAAAAACTGAAAGTTCCAATGCAAAAACTAGCCACATAAGTCAAATGGAA
ATAAAAACAAAAGAACCAAGTTTTAAACAACAAAATTAATGCATATATAG
TAAAAGATATGGAATAAATTGAATCAAATCAATAGTTACAAATAAAGTAG
CTGGCAAAGCTAAATGTCTTCATGTGGTAGTTATATACCACATATCCCAA
ACATGCCAAATTCTAATATAATGACAGTTATACCAAGGAGCGTACAAGCT
GAGACCCTGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e15.g1 MSMg01no094_e15.g1 CHROMAT_FILE:
MSMg01no094_e15.g1 PHD_FILE: MSMg01no094_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
         (436 letters)



>mm_chr12_49268633_49269467
          Length = 835

 Score =  727 bits (376), Expect = 0.0
 Identities = 421/436 (96%), Gaps = 1/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcttctgtggaaaagaataagttcttcttaagggatcctaactaagaaggatcatga 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 635 atctcttctgtggaaaagaataagttcttcataagggatcctaactaagaaggatcgtga 576

                                                                       
Query: 61  ttaagcaaatatttatttcaaactaattatcaataagagagagagaggcagtaagataag 120
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 575 ttaagcaaatatttatttcaaactaattatcaataagagagagagaagcagtaagatatg 516

                                                                       
Query: 121 tcttaaaatatgttataaaatgggtagatgaaattaagaaatatatcaatgtgttatagt 180
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 515 tcttaaaatatgttataaaatggatggatgaaattaagaaatatatcaatgtgttatagt 456

                                                                       
Query: 181 tcaagaaaagttatagttttgatatgctatttaaaaatagatatcatttatgtctgatta 240
           |||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 455 tcaagaaaagttatagtaatgaaatgctatttaaaaataaatatcatttatgtctgatta 396

                                                                       
Query: 241 ggttgttatgtagtagtattacaattctttgagaaaatagaatattggactacacattaa 300
           |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||
Sbjct: 395 ggttgttatgtagtagtattacaattctatgagaaaatagaaaattggactagacattaa 336

                                                                       
Query: 301 aaactgaaagttccaatgcaaaaactagccacataagtcaaatggaaataaaaacaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaactgaaagttccaatgcaaaaactagccacataagtcaaatggaaataaaaacaaaag 276

                                                                       
Query: 361 aaccaagttttaaacaacaaaattaatgcatatatagtaaaagatatggaataaattgaa 420
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aa-aaagttttaaacaacaaaattaatgcatatatagtaaaagatatggaataaattgaa 217

                           
Query: 421 tcaaatcaatagttac 436
           ||||||||||||||||
Sbjct: 216 tcaaatcaatagttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space:   352702
Effective search space used:   352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)