BAC Information

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BAC

Clone NameMSMg01-094H05
Chromosome12 (Build37)
Map Location 121,156,454 - 121,257,530
singlet/doubletdoublet
Overlap geneGm528, LOC100043017
Upstream geneAbcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H05.T7 (MSMg01no094_h05.b1)MSMg01-094H05.TJ (MSMg01no094_h05.g1)
ACCAG311620AG311621
length684691
length of high quality
(start - end)		617 (43 - 659)601 (73 - 673)
definitionCHROMAT_FILE: MSMg01no094_h05.b1 PHD_FILE: MSMg01no094_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:06 2005CHROMAT_FILE: MSMg01no094_h05.g1 PHD_FILE: MSMg01no094_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,256,918 - 121,257,530)(121,156,454 - 121,157,054)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCACAAATTGAAATTAATTACAATGTTGTTGCAACAAGGAATTGCT
GAGGTCTTGATTTTTACCATACTTGAAATCATTTGTCTTTCAAAACAAAG
ACATCAATAAGTTATTGTTGGTTCTGTATGTGTTTACTTTTGAATGATTC
ATAAAATATGCAATTACAATTCTAAAGCTCATGCTAGTCAAATGGTGTCT
GTGTACAGTATTAGTCACTGCTATTTCCATTTAGTTTTTTGGAGGAATCT
TCTTCATAAAAATTGGTCAGTATGCTGAGATGACTAAGCTACAACATTTC
TGGAAAGTTTATACCCTCTAGAAAGGGATAAAGGGTGAGTGAGGCCAAAC
TGAGAAGGAATAACTTTAGTCGATGCCCAGGAGAAATAAGAAATCCAAGA
GCCATTTTAACTGCTACTCCCAGGTCTTCAGCTTCTCCTGCCTCATGAAC
AACCTGAAAAATGTTGAGTTCTTTAAAACATTGATTGTACTCTTCCATTA
AACATCAGTTGCGGTGCTCCATTACTCATGTTGTCTGTCATTTCCTGTTA
GCAAAATTACATGAATTAATTAAAACTCACGTTAGAGTAAAACATTGATA
TGCTTAATAGAAACACAAAAATTACAGGCCATTG

CAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATAGTTGACACTAAGGAATATGTATT
GGAATAAATTATTTATTCATCTTTGTACCTGAGAGGATGTTATTATCTTT
CTAAGTGTTAAATATCAACTTGCAATAAAAATCTGAAATAATGCCAAGAG
AAAATGAACTGTATGAACTACACTTTGAAGCAATACTTATTTCTAAAGCA
TTCTGTAACCTGGTTATTGCTTTCTAGATTTTTATAAAAATAGCATGATC
ACTGTATTCTCACTGTCAAGGATATTGGAAAAGTTCAATGAGAGTGAAGG
GAATAAAATAACTGATGGGATGTTTACTGTGCAAATCTCAGCTCAACAAA
TAATGCAATATTACTTCTTTTCACTAATTCATATTTTATGAGAACTATAT
TTAAATGTGTTCTTCCTTCTCTGTTGACTTTGATTATACTTAAGAGAATC
TAAAACACTCAGAAAACATTTGTACTTATTTATCTCAGTAAACTTACTAA
TTTATTTAGCAGAATATGTCTGATTTATCTTTATCTACTCCCTGAATACA
AAGTAATACTACTTTGATATTTGTTGGCTACCTTGACTACATTTGTGGTA
TTATTTGTGATTGCTAATGAAGGACAGATTTGTTCTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h05.b1 MSMg01no094_h05.b1 CHROMAT_FILE:
MSMg01no094_h05.b1 PHD_FILE: MSMg01no094_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:06 2005
         (617 letters)



>mm_chr12_121256714_121257530
          Length = 817

 Score = 1178 bits (609), Expect = 0.0
 Identities = 612/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcacaaattgaaattaattacaatgttgttgcaacaaggaattgctgaggtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattcattcacaaattgaaattaattacaatgttgttgcaacaaggaattgctgaggtc 758

                                                                       
Query: 65  ttgatttttaccatacttgaaatcatttgtctttcaaaacaaagacatcaataagttatt 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttgatttttagcatacttgaaatcatttgtctttcaaaacaaagacatcaataagttatt 698

                                                                       
Query: 125 gttggttctgtatgtgtttacttttgaatgattcataaaatatgcaattacaattctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttggttctgtatgtgtttacttttgaatgattcataaaatatgcaattacaattctaaa 638

                                                                       
Query: 185 gctcatgctagtcaaatggtgtctgtgtacagtattagtcactgctatttccatttagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gctcatgctagtcaaatggtgtctgtgtacagtattagtcactgctatttccatttagtt 578

                                                                       
Query: 245 ttttggaggaatcttcttcataaaaattggtcagtatgctgagatgactaagctacaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttttggaggaatcttcttcataaaaattggtcagtatgctgagatgactaagctacaaca 518

                                                                       
Query: 305 tttctggaaagtttataccctctagaaagggataaagggtgagtgaggccaaactgagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttctggaaagtttataccctctagaaagggataaagggtgagtgaggccaaactgagaa 458

                                                                       
Query: 365 ggaataactttagtcgatgcccaggagaaataagaaatccaagagccattttaactgcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaataactttagtcgatgcccaggagaaataagaaatccaagagccattttaactgcta 398

                                                                       
Query: 425 ctcccaggtcttcagcttctcctgcctcatgaacaacctgaaaaatgttgagttctttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctcccaggtcttcagcttctcctgcctcatgaacaacctgaaaaatgttgagttctttaa 338

                                                                       
Query: 485 aacattgattgtactcttccattaaacatcagttgcggtgctccattactcatgttgtct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aacattgattgtactcttccattaaacatcagttgcggtgctccattactcatgttgtct 278

                                                                       
Query: 545 gtcatttcctgttagcaaaattacatgaattaattaaaactcacgttagagtaaaacatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcatttcctgttagcaaaattacatgaattaattaaaactcacgttagagtaaaacatt 218

                        
Query: 605 gatatgcttaata 617
           |||||||||||||
Sbjct: 217 gatatgcttaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 817
Length adjustment: 10
Effective length of query: 607
Effective length of database: 807
Effective search space:   489849
Effective search space used:   489849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no094_h05.g1 MSMg01no094_h05.g1 CHROMAT_FILE:
MSMg01no094_h05.g1 PHD_FILE: MSMg01no094_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:06 2005
         (601 letters)



>mm_chr12_121156254_121157254
          Length = 1001

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatagttgacactaaggaatatgtattggaataaattatttattcatctttgtacctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatagttgacactaaggaatatgtattggaataaattatttattcatctttgtacctga 260

                                                                       
Query: 61  gaggatgttattatctttctaagtgttaaatatcaacttgcaataaaaatctgaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggatgttattatctttctaagtgttaaatatcaacttgcaataaaaatctgaaataat 320

                                                                       
Query: 121 gccaagagaaaatgaactgtatgaactacactttgaagcaatacttatttctaaagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagagaaaatgaactgtatgaactacactttgaagcaatacttatttctaaagcatt 380

                                                                       
Query: 181 ctgtaacctggttattgctttctagatttttataaaaatagcatgatcactgtattctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtaacctggttattgctttctagatttttataaaaatagcatgatcactgtattctca 440

                                                                       
Query: 241 ctgtcaaggatattggaaaagttcaatgagagtgaagggaataaaataactgatgggatg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccaaggatattggaaaagttcaatgagagtgaagggaataaaataactgatgggatg 500

                                                                       
Query: 301 tttactgtgcaaatctcagctcaacaaataatgcaatattacttcttttcactaattcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttactgtgcaaatctcagctcaacaaataatgcaatattacttcttttcactaattcat 560

                                                                       
Query: 361 attttatgagaactatatttaaatgtgttcttccttctctgttgactttgattatactta 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 attttatgagaactatatttaaatgtgttctttcttctctgttgactttgattatactta 620

                                                                       
Query: 421 agagaatctaaaacactcagaaaacatttgtacttatttatctcagtaaacttactaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaatctaaaacactcagaaaacatttgtacttatttatctcagtaaacttactaatt 680

                                                                       
Query: 481 tatttagcagaatatgtctgatttatctttatctactccctgaatacaaagtaatactac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttagcagaatatgtctgatttatctttatctactccctgaatacaaagtaatactac 740

                                                                       
Query: 541 tttgatatttgttggctaccttgactacatttgtggtattatttgtgattgctaatgaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgatatttgttggctaccttgactacatttgtggtattatttgtgattgctaatgaag 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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