BAC Information

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BAC

Clone NameMSMg01-094K19
Chromosome12 (Build37)
Map Location 100,050,239 - 100,050,869
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K19.T7 (MSMg01no094_k19.b1)MSMg01-094K19.TJ (MSMg01no094_k19.g1)
ACCAG311777AG311778
length1,511704
length of high quality
(start - end)
---632 (73 - 704)
definitionCHROMAT_FILE: MSMg01no094_k19.b1 PHD_FILE: MSMg01no094_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005CHROMAT_FILE: MSMg01no094_k19.g1 PHD_FILE: MSMg01no094_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNAAAAANNAAAANNAANNNNAAANNNAAAANTANAANNNACN
TTAAANAATANNNNAAAANAAAATAAAAATATAATAAAAAACAAATATTA
TAAATAANNAATACANCTATATTATTTTTTNNNTCCTTNTTTTATTTATC
GTNCATCTACACCCATGAAATTAATATAATACAGAACAATAAACAACAGC
TAATTATATATATATAGATAAATATATNTNNCTGCACGCGCGCCANCANC
GCACGTCCTGCTACGCTGGGTGAGCGGATGTGCGGCCCAAGTGGATGGAT
GTGGGAGTGTGCATAATGATCACGAGAACAATAACTTGTACACCAGAGCG
CCNCTGATATATAGCGCATGGTGTGATGGTGAGTGTATTGAGTGTGGTGA
ACGAGTGGTAAGAAAGGAGGATGAATTAGATAAAGAAGCGTTGTATTGTA
CGTTATCGTCCTCAGTTGCCTCCCTGATTGTGCCTCTNCTCTCCCTACCG
CATTATACATCTCGATTACCACCATACCTACTATAACATAAATCATAACA
ATACATGAACACAAGTATAAGACTAAGTAATATATATATATAGCTACGAG
TAGATAGATATCATGATATACTCAATAATACAGCTGAGATAGTATATGAT
CGAAACTGCCAGTGTTCAGCGCACTCGGATACGAGTTATTGGAACTACGC
TACTTATATCTACACCTCAGTTGTATGATATTACGAAGATGATGCGGTAT
TACCCATCCGCGCAATGANTCGCTATGCTATTAGCGCCACACATTGTATT
AGATATTTAGATACTACTATAAATGCCGTACTGGATACGAGAGTACGATC
GCGACGACGAATGACGATATCCGCAGAGACAGGATGAACGAACCGTGAGA
TACGAGAACAGTATGCGGCATTTAGGATACGTGGTGAGTGAATTCGCCGC
GCAATTGCGTTGATACACAGCACTCTACGATAGATATATTATAGATCAAC
TGCATATAACTACTGCTGTTCGTCATTACGCACGATCCTAAGTGTATATG
TCGCCGNTCGAATGTGATATGGACGATGGACAAGAGCTATACGCCGACAC
TGCGCGCATAGTATGTGTGTAATATATCGATATAGAGATAATCGACACAC
GCAACTAAACTAACACTACGTATGATNGACCATAGTGACGAATATTCCAC
GCGGCTCTTTCATACACGCGAGCGGGACATTAAGTTGCAGATNCACGAGC
ACGAGAGAGCTCGTAGTTGGTCGGCGTCAGTGTTTCCTACGCCTGCGCGC
CGCTCTACGTCGACGCTGAGAGTCTGTGATGTAGATACACNGACCACGCG
TCTCAGCATAATAGTATTGTGACACCCCGCGCTATAGGTTATAGATATTA
TGACGATACATTATATGTATCAGTANCGAGCAGAGACAGCGCAGAGAGTA
GCAGATGGTGAGAGAGTGAAGCGTATGTATATGATGATATTCATAATATA
TTTATGTGTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGATTCACACAATCTACCTGCTCTATAT
ACACTCAGAGGGAAACCAGAAGTGTTGAACTGGATAACATCTGTTGCTAC
TTCCAATTGTAGGCTTTATGAAGTTTATAATTACATAAAAGAAAGCAAAA
TTACCACTTTACCTCACCAGAGTGGTCATCACATGATGCCATGAGAACTT
CATTTGCTCTTCATCAAACCAATCAAATAAACACCAAGAGGCATTTTCTC
ACCTTCTTAGATTATATATACACAGCATAATCCGTACAGCCGAGGCCAGT
AGCCTTCTTAGTGTTCTGAGCTTTCCACAGCCTCAGGAAAATCACCCAGT
TTACTCCCATCACAGCCACTACTTGTTTAACAAGCCACTCACTGCCACTT
TCAAAGACAGTTATCCCAAACCATCTATTCTCATGCTGAAGGTGTTGGAA
AAGAAAGTCTTAATTGTACAATTATTTTCTTCCTTATAAAATGTGTTTTT
AAATATAGTAAGCTTTCATTCCTATTAGGGCCCTGTGGAGACTTAGCATT
ATAAAATGCTATTCTGCTGGATCATACTCTCTTAAGACTAAAATATTACA
GGGCGCAGTGGCATAGCACTGAGGAACCTGGGGCAGAAAAATGGCTAGTG
AGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k19.g1 MSMg01no094_k19.g1 CHROMAT_FILE:
MSMg01no094_k19.g1 PHD_FILE: MSMg01no094_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:25 2005
         (632 letters)



>mm_chr12_100050039_100051070
          Length = 1032

 Score = 1166 bits (603), Expect = 0.0
 Identities = 624/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattcacacaatctacctgctctatatacactcagagggaaaccagaagtgttgaactg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattcacacaatcgacctgctctatatacactcagagggaaaccagaagtgttgaactg 260

                                                                       
Query: 61  gataacatctgttgctacttccaattgtaggctttatgaagtttataattacataaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataacatctgttgctacttccaattgtaggctttatgaagtttataattacataaaaga 320

                                                                       
Query: 121 aagcaaaattaccactttacctcaccagagtggtcatcacatgatgccatgagaacttca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aagcaaaattaccactttacctcaccagagtggtcatcacatgatgccatgagaacttta 380

                                                                       
Query: 181 tttgctcttcatcaaaccaatcaaataaacaccaagaggcattttctcaccttcttagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgctcttcatcaaaccaatcaaataaacaccaagaggcattttctcaccttcttagat 440

                                                                       
Query: 241 tatatatacacagcataatccgtacagccgaggccagtagccttcttagtgttctgagct 300
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatacacaggataatcagtacagccgaggccagtagccttcttagtgttctgagct 500

                                                                       
Query: 301 ttccacagcctcaggaaaatcacccagtttactcccatcacagccactacttgtttaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccacagcctcaggaaaatcacccagtttactcccatcacagccactacttgtttaaca 560

                                                                       
Query: 361 agccactcactgccactttcaaagacagttatcccaaaccatctattctcatgctgaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccactcactgccactttcaaagacagttatcccaaaccatctattctcatgctgaagg 620

                                                                       
Query: 421 tgttggaaaagaaagtcttaattgtacaattattttcttccttataaaatgtgtttttaa 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tgttggaaaagaaagtcttaattgtacaatcattttcttccttataaaatgtgtttttaa 680

                                                                       
Query: 481 atatagtaagctttcattcctattagggccctgtggagacttagcattataaaatgctat 540
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 atatagtaagctttcatttctattagggccctgtggagacttagcattataaaatgctct 740

                                                                       
Query: 541 tctgctggatcatactctcttaagactaaaatattacagggcgcagtggcatagcactga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgctggatcatactctcttaagactaaaatattacagggcgcagtggcatagcactga 800

                                          
Query: 601 ggaacctggggcagaaaaatggctagtgagg 631
           |||||||||||||||||||||||||||||||
Sbjct: 801 ggaacctggggcagaaaaatggctagtgagg 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)