BAC Information

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BAC

Clone NameMSMg01-094N10
Chromosome12 (Build37)
Map Location 58,277,085 - 58,277,413
singlet/doubletsinglet
Overlap geneSlc25a21
Upstream geneLOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N10.T7 (MSMg01no094_n10.b1)MSMg01-094N10.TJ (MSMg01no094_n10.g1)
ACCAG311900AG311901
length657800
length of high quality
(start - end)
330 (15 - 344)37 (76 - 112)
definitionCHROMAT_FILE: MSMg01no094_n10.b1 PHD_FILE: MSMg01no094_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:39 2005CHROMAT_FILE: MSMg01no094_n10.g1 PHD_FILE: MSMg01no094_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCCTATCGGGAGAGGATCCGCGGAATTCCACATACTCCAAAAGCGTT
GATTATGAAACAGCTGTTTACAAATGAAAATATTGTTTTTGGCTGCCCAG
CTAAATGGGAAACAGATTTGAAAAGTTCCAAGAATTTGAATGCAAATTTA
CCATATCATTTATACTGAACCAAGAACATTGGTAAGATTGCAACATAGTT
TATAAAATAATTCAGTTGAAGACTGTTTTGTAGTATATAAATATGAACAG
TGAAACAATTTTTTAAATTTTTTTAAACTATTTTTTTTCCTGTGTGAAAA
TTAGTGTATCAGTGTGGCTAGTGTACTCCAGAGGGTTTTTTTTTTTTTTG
AACTGATGAACTGTCTTTTTTTTTTTTTTAACGTTTCCACGACCACAGAT
TAGCAAATGGAGCAGTTAGAATGCATAGGCAATTGGATGTAATTCAAATG
ACTTTTCAAATAGTTAGTTAATATATATGAGCTGGTATGTGTGATAAAGA
GCTTTTAAGTATTAGCCAACTGTCAATTTTATTAAAAAGCAAGACTCTGT
ATAAGTAAAATGATATCTCTCTGGAAACTTCAATTTTTCATAAGTGATTT
ACCCATAAAAACTTTCCAATTTCCCCTTAAAATATTCTATTAACGAATTT
TGCTCCA
GATTGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAATTCTAGTTATGGGTAGGGAA
CGTGGGGGGNGAGGGTATCTTTTCCCCCCCCCTTTTTCTCCTCCTCTCTC
CCCTTTTTCTTCTTCTCGTTTCTCCCCCCCCCTTTTTTTTTTTCCTCTTT
CCCCTTTCCTCCTTTCCTTCTCCCCTTTTCTTCCCCCCTGCCTCCTCCCT
TCCCCTTTCCCTTCTTTTTTTTTTTTTTTTCCATCCCGCCTTATTCATTC
CTTTACTCTTTCCCCCTTCTCTTTGTTACCCCCTTTTCTTTTTTTGTTTT
ATTCCCACTATTTATTATTCTAAGACAGGGTATTTATTTCTCCTCCCATT
ACCCCCCAATACCTATTACATTATTATTCAACACTCTCTATCCCCCCCCC
ATCTTATCACTTTCCTATTCCTTACCCCACTCGTTAATATACCATTTCAC
GTATCTTATTATAGCAATCAAATCAACTCACCCTTAAATATTTTACCACT
TTTTTATTTTACTCTATTTTCTACCCCCCCTGATTAAATCAGTTATTTAT
ATTATTCCCATTATTTCTCACATATCTCCACCACTACCACCTTAATTACC
TATAATTAAAATAATTATACAACACTGTTACTTTTTAATCCCCCTCTTAT
TCACTTATCTTTTTACCCCGCGTTTTATTATTTACCTCTCCATTTATCTC
TTATCCCGTTTTTCCCCCTTTTCCCCTTATTAGATTTTTTATCACTATTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n10.b1 MSMg01no094_n10.b1 CHROMAT_FILE:
MSMg01no094_n10.b1 PHD_FILE: MSMg01no094_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:39 2005
         (330 letters)



>mm_chr12_58276972_58277701
          Length = 730

 Score =  567 bits (293), Expect = e-166
 Identities = 316/329 (96%), Gaps = 9/329 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaattccacatactccaaaagcgttgattatgaaacagctgtttacaaatgaaaatatt 70
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggaattccacatagtacaaaagcgttgattatgaaacagctgtttacaaatgaaaatatt 383

                                                                       
Query: 71  gtttttggctgcccagctaaatgggaaacagatttgaaaagttccaagaatttgaatgca 130
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtttttggctggccagctaaatgggaaacagatttgaaaagttccaagaatttgaatgca 323

                                                                       
Query: 131 aatttaccatatcatttatactgaaccaagaacattggtaagattgcaacatagtttata 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatttaccatatcatttatactgaaccaagaacattggtaagattgcaacatagtttata 263

                                                                       
Query: 191 aaataattcagttgaagactgttttgtagtatataaatatgaacagtgaaacaatttttt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaataattcagttgaagactgttttgtagtatataaatatgaacagtgaaacaatttttt 203

                                                                       
Query: 251 aaatttttttaaactattttttttcctgtgtgaaaattagtgtatcag---------tgt 301
           |||||||||||||||| |||||||||||||||||||||||||||||||         |||
Sbjct: 202 aaatttttttaaactactttttttcctgtgtgaaaattagtgtatcagtgtagaacatgt 143

                                        
Query: 302 ggctagtgtactccagagggttttttttt 330
           |||||||||||||||||||||||||||||
Sbjct: 142 ggctagtgtactccagagggttttttttt 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)