BAC Information

Click to search

BAC

Clone NameMSMg01-094P24
Chromosome12 (Build37)
Map Location 62,615,617 - 62,616,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094P24.T7 (MSMg01no094_p24.b1)MSMg01-094P24.TJ (MSMg01no094_p24.g1)
ACCAG312021AG312022
length1,270700
length of high quality
(start - end)
---623 (73 - 695)
definitionCHROMAT_FILE: MSMg01no094_p24.b1 PHD_FILE: MSMg01no094_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:52 2005CHROMAT_FILE: MSMg01no094_p24.g1 PHD_FILE: MSMg01no094_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCNNNNNNCCCCNNNNNNNNNNNNNNNNNCCCCCNTTTTNCCNNN
NNNTNNNNNNCCNNTNNNNNCCCNCCNTTTTNNTNNNNTTTCCCCCTTTT
TTTTCTCTCCCCTTTTTTTCTTCACCCCTCCCCCCCCGCCACTTTTTCCC
CCCCCTCGCCGCCGCTTCTTTTTTTTTTCNCCTTNNATTTAGCCCAACAC
CTCACCCTACTCCGGCTTTGTGCCCTCTATTGCTGGCCGTGTCTATGGTG
TACTGCGTACAGCGGCAGTNGTTGCCTTCCTCGCCCCGCCGTCGTCGGTA
TTCTTTCCTTGCGTGTGTTCCTGTGCTGTGGTCCCTCCCGCCGCCTTTGC
TTCGTTGTCCCGCCCTCGTTGTTCTGTAGGATCGTGTGTCTACCATTGTC
TATGTCACATGCTGCTACAATCTAGCGCTGTCGCGCCACCCTCTATGTGA
GCAACACCCGCATTCTCCANTATATGGCATATTATCTGCCACTAGGACAT
ATTCTACTCACGATGATGCTTGAGTCCGGCGTACATAATCATGCGACACG
GATTACAACGCGCACGTGACGATAATGCTGCGCGCCGCCTTAACCCTCCG
CGATATACGTCGATCACTATCTCCAATTGCCACCGAACTATTTACCCACA
GAGTGAATCACACATATTTGCGTAACTTGCAGTGTAATATAGTCATACGA
ATTTGTATAATGAGCTATACACAGTGTTAGGCGTTGCACAAAGGACGACA
CGATTAGGTGCAGTGTTATGAGCGAAGATGGATGGAGATATGTAGTGAGC
GTTGAAAGTGTTTGGGAAGTGGGAGAGATAAGAGTGGGGATGGATGGATG
AGTGAGGAATGTAAGGACGAGGTGAGAAGGAAGTGGGAGAGATGATGTAT
GATGACAGTTGCGTGAGGCTCGACAGCAACAACGACGGATGGTCACCGTA
ATATGACTGCATATGTGATACGAGGAAATGGTCGAGTACATATCACCGGA
GAAAATTAAGCGCTCGTCCTGGGTATGCGTCCGGCTAATAGGATGAACGC
ACACAAGCTGATNACATATGAGCAGGTCCGCAACTAGTGAGGCGCGCGGC
TATGTGTGTGCGGGCTGACCTGTACAGGGAATGAGCGAGGCACGAGACGA
TGAAATGTAACGACCCGAATGTCGTCCAACTCTAATTCTTGTTTAGCAGA
GGGATCGAAGCACGCTGTGCGCGATAGACATATATGACATAGATAAGGCG
CACGATGATGTGTGATAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTTCAGGAACACTAAAATGACGCAGT
CAATGAAGTGCTTCCAAGGAAGCATCATGATTTGAGACCTACACTACCCC
CACCCCAAACACTTAAAAACTCCAGGTCCTAGTGAGAAATCCTGACTGAT
GAAACAATATGAATTAACAGCTCATTAGAAAGAACACCTAAGCTGTCCCC
TGGCTTCCCTATGCACGTGCACACACACACACACACACACACACACACAC
ACACACACACACACACTCATACATGCATATATGTGCACATACTCCTTACA
CACAAGTATCCCATTCATTCGCATTCCGAAGTATTTGAATTTGCATAGAC
AGAAATCTGATGTAGAGGATAGAAATGAAATCTAATATAGAGGATAGAAA
TAATTCAACCCAGGCTGACGTTGCATTGCTGTATGAGATCACTGAGCGTA
GTCAACCTCAGCCAGCCAAGAAGCTGAATCCACTCCAGGGCACTAAAGTT
TCCTCATAGGAATTTTGTTGTTGTTGTTCTCATCAAACATTCCATAATAT
TGGACCGGAATTCTCTTCTGTCATGTTGTACTAACTGTGGATTTGTGTGG
CAGGGACAGAAAAGGGGGAAGGGTTGATTAGTTCTGTAAATGAAGCCATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_p24.g1 MSMg01no094_p24.g1 CHROMAT_FILE:
MSMg01no094_p24.g1 PHD_FILE: MSMg01no094_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:53 2005
         (623 letters)



>mm_chr12_62615166_62616188
          Length = 1023

 Score = 1025 bits (530), Expect = 0.0
 Identities = 553/572 (96%), Gaps = 19/572 (3%)
 Strand = Plus / Minus

                                                                        
Query: 71   actacccccaccccaaacacttaaaaactccaggtcctagtgagaaatcctgactgatga 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 actacccccaccccaaacacttaaaaactccaggtcctagtgagaaatcctgactgatga 964

                                                                        
Query: 131  aacaa-tatgaattaacagctcattagaaagaacacctaagctgtcccctggcttcccta 189
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  aacaattatgaattaacagctcattagaaagaacacctaagctgtcccctggcttcccta 904

                                                                        
Query: 190  tgcacgtgcacacacacacacacacacacacacacacacac------------------a 231
            |||||||||||||||||||||||||||||||||||||||||                  |
Sbjct: 903  tgcacgtgcacacacacacacacacacacacacacacacacacacacacacacacacata 844

                                                                        
Query: 232  cacacacacacactcatacatgcatatatgtgcacatactccttacacacaagtatccca 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  cacacacacacactcatacatgcatatatgtgcacatactccttacacacaagtatccca 784

                                                                        
Query: 292  ttcattcgcattccgaagtatttgaatttgcatagacagaaatctgatgtagaggataga 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  ttcattcgcattccgaagtatttgaatttgcatagacagaaatctgatgtagaggataga 724

                                                                        
Query: 352  aatgaaatctaatatagaggatagaaataattcaacccaggctgacgttgcattgctgta 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  aatgaaatctaatatagaggatagaaataattcaacccaggctgacgttgcattgctgta 664

                                                                        
Query: 412  tgagatcactgagcgtagtcaacctcagccagccaagaagctgaatccactccagggcac 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tgagatcactgagcgtagtcaacctcagccagccaagaagctgaatccactccagggcac 604

                                                                        
Query: 472  taaagtttcctcataggaattttgttgttgttgttctcatcaaacattccataatattgg 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  taaagtttcctcataggaattttgttgttgttgttctcatcaaacattccataatattgg 544

                                                                        
Query: 532  accggaattctcttctgtcatgttgtactaactgtggatttgtgtggcagggacagaaaa 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  accggaattctcttctgtcatgttgtactaactgtggatttgtgtggcagggacagaaaa 484

                                            
Query: 592  gggggaagggttgattagttctgtaaatgaag 623
            ||||||||||||||||||||||||||||||||
Sbjct: 483  gggggaagggttgattagttctgtaaatgaag 452



 Score = 76.1 bits (39), Expect = 7e-18
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 198 cacacacacacacacacacacacacacacacacacacacacacacac 244
           |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14  cacacaaacacacacacacacacacacacacacacacacacaaacac 60



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 199 acacacacacacacacacacacacacacacacacacacacacacac 244
           |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9   acactcacacaaacacacacacacacacacacacacacacacacac 54



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 198 cacacacacacacacacacacacacacacacacacacacacacaca 243
           |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 16  cacaaacacacacacacacacacacacacacacacacacaaacaca 61



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 198 cacacacacacacacacacacacacacacacacacacacacacacac 244
           |||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 2   cacacaaacactcacacaaacacacacacacacacacacacacacac 48



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 198 cacacacacacacacacacacacacacacacacacacacacacacac 244
           |||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 4   cacaaacactcacacaaacacacacacacacacacacacacacacac 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 8
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)