BAC Information

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BAC

Clone NameMSMg01-095C12
Chromosome12 (Build37)
Map Location 85,780,158 - 85,780,781
singlet/doubletsinglet
Overlap geneAldh6a1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2
Downstream geneLin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C12.T7 (MSMg01no095_c12.b1)MSMg01-095C12.TJ (MSMg01no095_c12.g1)
ACCAG312137AG312138
length686710
length of high quality
(start - end)
639 (44 - 682)465 (74 - 538)
definitionCHROMAT_FILE: MSMg01no095_c12.b1 PHD_FILE: MSMg01no095_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:05 2005CHROMAT_FILE: MSMg01no095_c12.g1 PHD_FILE: MSMg01no095_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTCCATCACCCACACTGCACACCTCACAACCAACTGTAGCCTCAG
TTTCAGGAGCTCCAATACCCTTTCTGGCCTCCGTGGGTACCCACACACAT
ATGGCGGACACACAGAGTCACATGCACCTTAAATAAACATTAAAAATCCC
AACCAATTTTTAACCCCTTCGTTTCTTTGGGAGTCAGATTCAGTAGTCAT
ATAAAAGAGTTACCATCATGTTGTCCATGGATAATGTTCAGTGTTCCGTC
AGGGGCCCCAGAATCCTGAAGCAACTTAGCAAGGAGCATAGTTGCTCCAG
GTACTCGCTCTGATGGTTTCATTAGGAAAGTATTTCCACAAACCATAGCC
ATGGGAAACATCCAAAGGGGGATCATGGCAGGAAAATTAAATGGTGCAAT
GCCTGCACACACCCCCAGAGGCAGACGGTAGGAATAAAGGTCCATGTCTT
TGGTGATAGATGGCATGGTCTCTCCCAGCATGAGGGATGTCACACTACAG
GCATGCTCAACCACCTCTGGAAGAGAAAAGACATCAGTGAGGTCACCACC
TTTCCATGCTAAATACTACTTAGCTTTGTCACACTCCATTCGATCTTGAC
AATCAGGGGTGGGTCATGCCACTGACAGCGATTTGT
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTATTTAGACTAGGTTTAGACTTGAA
CTTAGAGATCTGCCTGCCTCTCCCCTGAGTGCAGGTATTAAAGGCTTGTG
CCACCATGCCCAACCTAGATGGGACCTTTAAAAAAGAAGAGAAAAGAAAA
GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA
GAGAAGAAAAGAAAAGAGAAAAGAAAAGAAAAAGATGTGTGTGTATGTGT
GTGTGTGTATACACGTACACGCACTAGTGCACTCATGTAGTCGACTGACA
ACTTTCAGGAGTCCATTCTCTCCTTTCCCACCCGAGTCCCTAGGAGTGAA
CTTAGATGGTCAGGCTTGGACAGCAGGCATCTTTACCCATTGATCCATCT
CCCTGACCCAGAGGTGGGCAGACTCTTAGGGGTGATTAGGTCCAGAGTGC
TCTGCCCTCACGAATGGGCTGAGCCAGTCCCAGCGTGGAGGAGCTAACTG
TAAAGGTGGATGGTTCCATTCTCCCTCACTTTCCTGTCCTCCTTCTCCCT
CACTCCCTTCTTCTATTTTCCTGGATTCCTACCTGGGTTTATTGTTGCCT
TCTGCATCATGAATCCTCTGATAATTCCTTCGTCTTGAATGGTTTTTTAT
TTTTTACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c12.b1 MSMg01no095_c12.b1 CHROMAT_FILE:
MSMg01no095_c12.b1 PHD_FILE: MSMg01no095_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:05 2005
         (639 letters)



>mm_chr12_85779943_85780981
          Length = 1039

 Score = 1141 bits (590), Expect = 0.0
 Identities = 619/636 (97%), Gaps = 13/636 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttcc-atcacccacactgcacacctcacaaccaactgtagcctcagtttcag 63
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcagttcccagcacccacactgcacacctcacaaccaactgtagcctcagtttcag 275

                                                                       
Query: 64  gagctccaataccctttctggcctccgtgggtacccacacacatatggcggacacacaga 123
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 gagctccagtaccctttctggcctctgtgggtacccacacacatatggcggacacacaga 335

                                                                       
Query: 124 gtcacatgcaccttaaataaacattaaaaatcccaaccaatttttaaccccttcgtttct 183
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 336 gtcacatgcaccttaaataaacattaaaaatcccaaccaattttt------------tct 383

                                                                       
Query: 184 ttgggagtcagattcagtagtcatataaaagagttaccatcatgttgtccatggataatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgggagtcagattcagtagtcatataaaagagttaccatcatgttgtccatggataatg 443

                                                                       
Query: 244 ttcagtgttccgtcaggggccccagaatcctgaagcaacttagcaaggagcatagttgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcagtgttccgtcaggggccccagaatcctgaagcaacttagcaaggagcatagttgct 503

                                                                       
Query: 304 ccaggtactcgctctgatggtttcattaggaaagtatttccacaaaccatagccatggga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaggtactcgctctgatggtttcattaggaaagtatttccacaaaccatagccatggga 563

                                                                       
Query: 364 aacatccaaagggggatcatggcaggaaaattaaatggtgcaatgcctgcacacaccccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatccaaagggggatcatggcaggaaaattaaatggtgcaatgcctgcacacaccccc 623

                                                                       
Query: 424 agaggcagacggtaggaataaaggtccatgtctttggtgatagatggcatggtctctccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaggcagacggtaggaataaaggtccatgtctttggtgatagatggcatggtctctccc 683

                                                                       
Query: 484 agcatgagggatgtcacactacaggcatgctcaaccacctctggaagagaaaagacatca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcatgagggatgtcacactacaggcatgctcaaccacctctggaagagaaaagacatca 743

                                                                       
Query: 544 gtgaggtcaccacctttccatgctaaatactacttagctttgtcacactccattcgatct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 744 gtgaggtcaccacctttccatgctaaatactacttagctttgtcacactccattcgatcc 803

                                               
Query: 604 tgacaatcaggggtgggtcatgccactgacagcgat 639
           ||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgacaatcaggggtgggtcatgccactgacagcgat 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)