BAC Information

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BAC

Clone NameMSMg01-095H14
Chromosome12 (Build37)
Map Location 99,444,984 - 99,618,516
singlet/doubletdoublet
Overlap geneGalc, Gpr65
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H14.T7 (MSMg01no095_h14.b1)MSMg01-095H14.TJ (MSMg01no095_h14.g1)
ACCAG312378AG312379
length790764
length of high quality
(start - end)
313 (159 - 471)287 (130 - 416)
definitionCHROMAT_FILE: MSMg01no095_h14.b1 PHD_FILE: MSMg01no095_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005CHROMAT_FILE: MSMg01no095_h14.g1 PHD_FILE: MSMg01no095_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,444,984 - 99,445,296)(99,618,233 - 99,618,516)
sequence
NTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNN
NNCCCCNNCCCCNNNNNCCCCCTCTCACCATACCATTAATXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATTTTCTCC
GGTTGGATGGGAACACAGAGCAAATTTAAATTTGTTCTTTGAATCTCAAT
TTCAGTTTCTGCTTACAACCTAAACAGAAGCAGGAAGGGGCTGCTACAGG
AGAGGCACACATCGCAGATCGCACAGCATCCTTTGGGAAACGCTCAGTAT
CTGCTTCATGATCAACCAAGGATGCTGCTGCTGCTGCTGCTGGCCAGATT
CCCTTCATCCTGTGAACTCTCCTGTATCTCCTCTAATAATAAAAGTGTAG
AAAACTGTGCTGAGACTTCAATGAGTCTAAACGATCAGAAGTAAGTTTCC
ATGACTCTGCCTACTCCTGTAAGTTGTATTTAGACTCTTGATTCAAGAAC
ACTGAGAACCATAATTCACTTGTTGACTTCACTGCTCACTCTTCAATTTA
CAAGGCTAAAATAAAGTTAGAAAGGAAACACTGGCTCTGAAAAGTGAACT
CCTGATTCCCACGAGAGTCACTGCCATACTTCTCCATGCTATGGTTGGAT
GTCTGGCGACTCCATCATAGACTCCCTCTTTTTCACATTTGACACATCTT
TTCCTATTGTTTCACAATAGAACCCTCCAGAAAGTTTTTCACACATTTTA
TTTCCCCCTCCTGTTTTATCAGGATAGACCCTCCCAAATT
NTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNCCCCCCCTCT
CTNTGCTCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATAGTGAAAGACAGATA
ATATAGCCTGTAAGACGTGCTGAAGACCGGAGATAGGAGAAGTGGAGCAC
TGGATGGAGAGCGTGTTGGCTGCTAGTGTAAAGCATGCAAAGAGCAAGTC
ATAAAGCATGCTGCTACTGCTCTTCTGAGCTGACAACTGTCACCCGTAAA
CTGGTCATCCATTGGTGACGATGCCCAGTGCTGCCTTGTCATGTGCCACA
TGTCCTCTGACTGAGAAATTCAGTCAATCTCTGTAGCTGTTGAATAGACT
GATTCCCAAGTGATGTTCTGTGTCCACGCCCCCCTCTGCTTCAGTCTCCT
AGAGGGAGCTGGTGCCTGCTCTGGCCCCACACACTTTGTGTTTTCTCACT
CGTGTCCTTGCTTCATCTCTGGACTTGATGATCCCTCTGCATTCTTTAAA
GGAACTGGACCGATGGAATAGACGCACACTATAAAAGTGGAGTTCCTTAC
ATTTGTCTAGTGAAGCCTCCATTGAACGTATACCCGACCCCTGATGTATA
TTTAACGAACTCTTTTAAATTGTCCCATCCCTCTTCTCCAACATTGCTGC
TTAATTAATAAATCCTAATTGTAATTTTTCCGGATTTTGATCTGGGGTGG
CCTCGTCTACTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h14.b1 MSMg01no095_h14.b1 CHROMAT_FILE:
MSMg01no095_h14.b1 PHD_FILE: MSMg01no095_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (313 letters)



>mm_chr12_99444784_99445496
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaacacagagcaaatttaaatttgttctttgaatctcaatttcagtttctgcttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaacacagagcaaatttaaatttgttctttgaatctcaatttcagtttctgcttacaa 260

                                                                       
Query: 61  cctaaacagaagcaggaaggggctgctacaggagaggcacacatcgcagatcgcacagca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaacagaagcaggaaggggctgctgcaggagaggcacacatcgcagatcgcacagca 320

                                                                       
Query: 121 tcctttgggaaacgctcagtatctgcttcatgatcaaccaaggatgctgctgctgctgct 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttgggaaacactcagtatctgcttcatgatcaaccaaggatgctgctgctgctgct 380

                                                                       
Query: 181 gctggccagattcccttcatcctgtgaactctcctgtatctcctctaataataaaagtgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggccagattcccctcatcctgtgaactctcctgtatctcctctaataataaaagtgt 440

                                                                       
Query: 241 agaaaactgtgctgagacttcaatgagtctaaacgatcagaagtaagtttccatgactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaactgtgctgagacttcaatgagtctaaacgatcagaagtaagtttccatgactct 500

                        
Query: 301 gcctactcctgta 313
           || ||||||||||
Sbjct: 501 gcatactcctgta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_h14.g1 MSMg01no095_h14.g1 CHROMAT_FILE:
MSMg01no095_h14.g1 PHD_FILE: MSMg01no095_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (287 letters)



>mm_chr12_99618031_99618717
          Length = 687

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaatagtgaaagacagataatatagcctgtaagacgtgctgaagaccggagataggagaa 62
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 486 aaatagtgaaagacagataatatagcctgtaagacgtgctgaagacaggagataggagaa 427

                                                                       
Query: 63  gtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaagagcaagtca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaagagcaagtca 367

                                                                       
Query: 123 taaagcatgctgctactgctcttctgagctgacaactgtcacccgtaaactggtcatcca 182
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taaaacatgctgctacagctcttctgagctgacaactgtcacccgtaaactggtcatcca 307

                                                                       
Query: 183 ttggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgactgagaaattc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgactgagaaattc 247

                                                       
Query: 243 agtcaatctctgtagctgttgaatagactgattcccaagtgatg 286
           |||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 246 agtcaatccctgcagctgttgaacagactgattcccaagtgatg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)