BAC Information

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BAC

Clone NameMSMg01-096I17
Chromosome12 (Build37)
Map Location 112,196,204 - 112,196,452
singlet/doubletsinglet
Overlap gene4930573I19Rik
Upstream geneLOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik
Downstream geneAnkrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I17.T7 (MSMg01no096_i17.b1)MSMg01-096I17.TJ (MSMg01no096_i17.g1)
ACCAG313196AG313197
length797799
length of high quality
(start - end)
49 (127 - 175)279 (128 - 406)
definitionCHROMAT_FILE: MSMg01no096_i17.b1 PHD_FILE: MSMg01no096_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005CHROMAT_FILE: MSMg01no096_i17.g1 PHD_FILE: MSMg01no096_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGGGGGGTGGGTGTGGTTATTCTTTTCTTCTCTTCCCCTCAATACA
GCCACTATAATTGCGGCGCTAAACGACTCCTATATTTCGAACGGGGCGAT
ATTCCTCGCTCATTCCCAAAAAAGGCGGTGATAGAGACAATGCCCGGGTT
TCCAAGCTGGGGGGGGGGGGGCCTTCCACAGTTTTTAAAGAATCATACAC
AGCGGGTTCCTTGTAGGCTTTATGGGGGTGAGAGTAAGCCACAAGGAATC
AAAACATTTCTCCAAATGAGCCCATTAAATTGGGTCCGTGGAAGGAAGGA
GTGTGGTTTCTAGCTAGGCCGGATGAATTTGTCACAGTATGATGTTACTG
CACAGTTCACAAAGCAAATGCCTATTTTTGTCTTCATCCACCGTACGTTC
CTGGCCCCCAGGCTGGCTAACCCCCCCTCCCCCGCTGCTGCCTGCATGGT
CCTTACTCCTGTCTTCACCCCCCAAATTTGTTACATAGACTTGCATTGAA
TCACTTTCTTCCTTCCTGATAGTCCAGACGAGACCCGTACTGACAGTCAT
AGCCCATTCCTGCATATTCATGTGCATCTTACACCACCTTCTTACGACTA
TATCCCTTGCCTTTTTGCTTTATTCCCCCCTTCTTCGTATTTACTTACGC
CCACATTTTTTTTTGTTTTCACTTTAGACACAAACCTGCGTTAGGATTTA
ACACACTTCAATCGAACACCTTTTTATTCTCTTACTCCCAGCCATATATT
TTGCTTCTACCCTGTACCTATTTATCATCAACCTTCATTCATTCGCC
TTTTTTTTTTNTNNTTTNNTNTTTTTTTCTCCTCCTTTTCACCCATACTA
ANCCCCGATGATATGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCAATTCAAAGGCAGAGGCAGGTAAATCTT
TGAGTTTGAGGCCAGCTTGGTCTACACAGTATGCCAATTAGGGCTACATA
GTATGACTCTTTCCTAACTAACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACAAGCCCAGTCTAATATTATT
ACCTTGATAAATTCTGACAAATGCTTAAAAACTCCATAACATCAATCCTC
CATAAGCTCTTTCAAAACAGAAGAGAAGTATTTCATCAATGTCTTTCTTT
AAAGCAGTGACGGGGACTGAGTGCAGGGCTTGCTGCATAGCTGGCCCAAT
CTCTACTACTAAGTTATACCTCCAGCTACCTACAGAACAGGAAGGCCCAG
ATGAATGCTCCTCGCCAATGTGATGGTAAACTCCTCAATAGCACCAGAAA
AGCAAACCTGACAGTTATACACAATATACAGGCTTATGTATCACCATAGC
ATAGCATCTACCACACGGATCATAGCGCATGATAGCCGCTCAGTGGCGGT
GCACGCCTTTAATCCTATTATTTGTCAGGCCGAACCAACGCGAATTTCCG
ACTTCGAGGCCCACCTTACCTACCAATTGATTTCTAGTACAGCCAGCGGT
TATATAGATAAACCCCTGTCCCATGGACATACAAAATACTACTGAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i17.g1 MSMg01no096_i17.g1 CHROMAT_FILE:
MSMg01no096_i17.g1 PHD_FILE: MSMg01no096_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:56 2005
         (279 letters)



>mm_chr12_112195850_112196528
          Length = 679

 Score =  389 bits (201), Expect = e-112
 Identities = 245/279 (87%), Gaps = 30/279 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggcagaggcaggtaaatctttgagtttgaggccagcttggtctacacagtatgccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 603 aaaggcagaggcaggtaaatctttgagtttgaggccagcttggtctacacagtatgccag 544

                                                                       
Query: 61  ttagggctacatagtatgactctttcctaactaacacacacacacacacacacacacaca 120
           |||||||||||||||||||||||||||||||||                           
Sbjct: 543 ttagggctacatagtatgactctttcctaacta--------------------------- 511

                                                                       
Query: 121 cacacacacacacacacacacacacacacacacaagcccagtctaatattattaccttga 180
              |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 510 ---acacacacacacacacacacacacacacacaagcccaggctaatattattaccttga 454

                                                                       
Query: 181 taaattctgacaaatgcttaaaaactccataacatcaatcctccataagctctttcaaaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 taaattctgacaaatgcttaaaaactccataacaccaatcctccataagctctttcaaaa 394

                                                  
Query: 241 cagaagagaagtatttcatcaatgtctttctttaaagca 279
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 393 cagaagagaagtatttcaacaatgtctttctttaaagca 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)