BAC Information

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BAC

Clone NameMSMg01-096M13
Chromosome12 (Build37)
Map Location 46,430,938 - 46,431,340
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M13.T7 (MSMg01no096_m13.b1)MSMg01-096M13.TJ (MSMg01no096_m13.g1)
ACCAG313379AG313380
length657765
length of high quality
(start - end)
542 (40 - 581)248 (127 - 374)
definitionCHROMAT_FILE: MSMg01no096_m13.b1 PHD_FILE: MSMg01no096_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:16 2005CHROMAT_FILE: MSMg01no096_m13.g1 PHD_FILE: MSMg01no096_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGAAGATGCGCGGAATTCTGCAAGTCTCCCAGGGATGTTTCTACTCAA
CACAGGAAAGCTTGTAAATTTGCTGCTTCAAGGACATTTCCTTTAATAAA
AGTACTATTGAGGAATCATTTCTTAGTTATGCTCTCCTGATTGGTGGTCA
AGATCAAGACAAAGAACCCACACACAAAAGGTGTATCACCGGGGTCGTTT
TATGGGAATCTCAGAACTTCATTTTTTCAATAAGGCCATAGTGGGGTTGA
GGACACAACTCAATTGGTAAAGTGCTCATGAGCCAAGGATGAAGACGTGA
GTTCAGATTCCTATCAATGAAGAATCGAGTTGTAAATAAACAAATAAACA
ATTAAACAAATAATAAATAAATTAATTAATAAAGCCACCCATCCGTAAAC
TCCAACACTGGAGTGTAAGGGTGGACACAGATAAGCAGATCACTGGACTG
TGGCCAGACAGCCTAATTGAATTAATAATCTCCAGGTTCATTGAGTGGCT
CTTTCACAAGATCAAACTGAAGAGCAATAGAGGACACTTGATGTGAACTT
CTGGTCTCTTGAAGCACTTGTACTATACTAACAAAGAAGCGAACAAATAA
AATAGATAGTGTTCTAAAGCAATCATCGAATCAGACAGCTTATATTCATA
TTTGTCC
NGGGTTTTGGGGTTTTGGTTTGTTGTCTCCCCTCTNTTCCCCCACCCCCN
NCNCCGATGATATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAAAAATAAAAATGAATGCACAACATACTCA
AGTCGACAGGACAAAATCAAAATTTTCATGGCCGTTAGTGCATACATAAA
CAAACTGGAGAGATCTCATACTAGCAGCTTAACAGCACACCCAAAAACTC
TGGAACAAAGAGAAGCAAGCCATCCAAGAAAAGTAATCAAACTCAGGGCT
GACATCAATAAAACAGAAACAAAGAGAACAATACACACTGTCAATGAAAC
AAAGAGTAGGTTCTTTGAGAAAATTTTTTTTTATAAACAAACCCTTATTC
AAACTAACTAAAAGACAGATAGCCAACATCCAAATTAACCAAGTCAGAAA
TGAGACTGGGGAGATAACAGTAAACACTAAGGATTTCCAAGGAATCATCA
GTTCACACATTAAAAACCTCTACTCCACATAATCAGAAAATACAGAAGAA
ATGGACAATTTTCTTGACAGATTCCATGTAACAAAGTTAAAGATAATCTA
TACAATATAATTACACATAACTCCTAAGAAATTGGAGCAGTCATTAATTT
TCCCCATCCCCCCAAAATGCCCAGAGTCAGATAGTTTTATTGACTCCTAC
TAGTCTTTCCAAAAAAGAACTAACATCAGAACCTTCTTAAATTACTCCTC
CGAAATATTAACCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m13.b1 MSMg01no096_m13.b1 CHROMAT_FILE:
MSMg01no096_m13.b1 PHD_FILE: MSMg01no096_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:16 2005
         (542 letters)



>mm_chr12_46430938_46431879
          Length = 942

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctactcaacacaggaaagcttgtaaatttgctgcttcaaggacatttcctttaataa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttctactcaacacaagaaagcttgtaaatttgctgcttcaaggacatttcctttaataa 344

                                                                       
Query: 61  aagtactattgaggaatcatttcttagttatgctctcctgattggtggtcaagatcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagtactattgaggaatcatttcttagttatgctctcctgattggtggtcaagatcaaga 284

                                                                       
Query: 121 caaagaacccacacacaaaaggtgtatcaccggggtcgttttatgggaatctcagaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caaagaacccacacacaaaaggtgtatcaccggggtcgttttatgggaatctcagaactt 224

                                                                       
Query: 181 cattttttcaataaggccatagtggggttgaggacacaactcaattggtaaagtgctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cattttttcaataaggccatagtggggttgaggacacaactcaattggtaaagtgctcat 164

                                                                       
Query: 241 gagccaaggatgaagacgtgagttcagattcctatcaatgaagaatcgagttgtaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gagccaaggatgaagacgtgagttcagattcctatcaatgaagaatcgagttgtaaataa 104

                                                                       
Query: 301 acaaataaacaattaaacaaataataaataaattaattaataaagccacccatccgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 103 acaaataaacaattaaacaaataataaataaattaattaataaagccaggcatccgtaaa 44

                                                      
Query: 361 ctccaacactggagtgt-aagggtggacacagataagcagatc 402
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 43  ctccaacactggagtgtaaagggtggacacagataagcagatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)