BAC Information

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BAC

Clone NameMSMg01-097I16
Chromosome12 (Build37)
Map Location 113,472,475 - 113,472,725
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097I16.T7 (MSMg01no097_i16.b1)MSMg01-097I16.TJ (MSMg01no097_i16.g1)
ACCAG313945AG313946
length751734
length of high quality
(start - end)
252 (134 - 385)121 (129 - 249)
definitionCHROMAT_FILE: MSMg01no097_i16.b1 PHD_FILE: MSMg01no097_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:19 2005CHROMAT_FILE: MSMg01no097_i16.g1 PHD_FILE: MSMg01no097_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACANNNNNACCAANAAAAAAACAACCNNCCANTTCACAACNNNAANCN
NGGTGGTGANNNTACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAGCAGTTCCCATGTAAGAGAGTTCTGTTCC
CAGGAAGTCCCCATAATGAGTATAAAAAAAGGCATGCCATACAGTGGCCA
AAGGCACAGCCAGCAAAAACCTGGAACGAAGGGAGCATGCAGCGCAGTCA
GTAAGGAAAACAGGAGCAGCACAGAGCACAGTCCGCAGAGCATCTCCAGC
AGGAGCTGGGGGTGGGAGCAGGGGTTAAAAGTGCTCACTGTTCCTACAGA
GGACCCAGCTTTGTTTCCCAGTGCCCTCATCGTGTTTCACCGGTGCCTGC
AACTCTAGTCCCAGGGGAATCCATTTTTGTCCTCCAGCCTCCGCAAGCTC
CTGCAAGCATGTGGTACACATAACCTCACATAGGCAAGCACGCGGACATT
TAATAATCAACCATAATAATCCTTAATAATAATAAAGGTTCCTACCAGCT
GAGGCGCACATTATCTTGGTTAATAGCTATCTGTTCTTTGATTTCTCTTA
AACAAATAGCTCTGGAAAAGATTTAGGCTCTTTGTTTCAGACTTGAGAAT
GTTTTCTTAGGTTTTGTAAAACTCTTCTCCTGACATGGATTTTTCCGTCT
ATTTTTGTTTTTTGTCATTCAAGGTTTTCTTATTTGCTCTTGATTTCCCG
G
CCAACTGCAACAACAAAAAAAAGGGGAATCGACCCATCAAACTTCCAACG
GGGGTNGAAACAATGATAGGATAGGCTGGCGGNCGCCTGTTCACAAGAGT
AGGTGAACTATAGATTGCCCCGAGAAATTCCTTCTTTATGTCCTCTACCA
TCTCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCGGGTGTGTTAG
GGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAG
AGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTG
GCAATCTCTGGAGCTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCC
TCTGTTGATTTTGTTACCCTCTTTCAGTAGGGGTGGGAGACAAGGTCTCT
TCTCTGAGTTTCAGTGGTCACAGCAGTCTCTGTAGGTGAGCTCTCCTCTG
TCAAGAAAGGTGTATAGTTATCTGATAAATGGACATCCTCCTGAATGAGG
GCGAAGGCCCACAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAG
GACGGTGGACAGTTGTCTGGAGTCTATTAACTCGGAGTCCCAGAAACTCT
GTGTCTCTCGCCGGTGAAGGAGGTTGGTCGCCAGCACCTGGAGATCAACC
CGCTTCAGAATCTCTGCAAATATCTCGAATGGGGGGGAGATACGTGGGGG
GGGGGTAATAATGGCGGGGCGAAAAGAGGGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_i16.b1 MSMg01no097_i16.b1 CHROMAT_FILE:
MSMg01no097_i16.b1 PHD_FILE: MSMg01no097_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:19 2005
         (252 letters)



>mm_chr12_113472358_113473009
          Length = 652

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagagagttctgttcccaggaagtccccataatgagtataaaaaaaggcatgccataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taagagagttctgttcccaggaagtccccataatgagtataaaaaaaggcatgccataca 309

                                                                       
Query: 61  gtggccaaaggcacagccagcaaaaacctggaacgaagggagcatgcagcgcagtcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtggccaaaggcacagccagcaaaaacctggaacgaagggagcatgcagcgcagtcagta 249

                                                                       
Query: 121 aggaaaacaggagcagcacagagcacagtccgcagagcatctccagcaggagctgggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggaaaacaggagcagcacagagcacagtccgcagagcatctccagcaggagctgggggt 189

                                                                       
Query: 181 gggagcaggggttaaaagtgctcactgttcctacagaggacccagctttgtttcccagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gggagcaggggttaaaagtgctcactgttcctacagaggacccagctttgtttcccagtg 129

                      
Query: 241 ccctcatcgtg 251
           |||||||||||
Sbjct: 128 ccctcatcgtg 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)