Query= MSMg01no098_m03.b1 MSMg01no098_m03.b1 CHROMAT_FILE:
MSMg01no098_m03.b1 PHD_FILE: MSMg01no098_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:58 2005
(569 letters)
>mm_chr12_34267467_34268435
Length = 969
Score = 891 bits (461), Expect = 0.0
Identities = 467/471 (99%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 103 ttcctatgcattctgtattatcactactttgtagtcttatccctatgtgattctatatgc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ttcctatgcattctgtattatcactactttgtagtcttatccctatgtgattctatatgc 910
Query: 163 aaatgtgtgtgataatatataaccatatatatccatatatatgtgtgtgtatatattcat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aaatgtgtgtgataatatataaccatatatatccatatatatgtgtgtgtatatattcat 850
Query: 223 cacatagagaagatgttgagataatataatacgtatgtatacacacactc----acatat 278
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 849 cacatagagaagatgttgagataatataatacgtatgtatacacacactcacatacatat 790
Query: 279 atatatatatatatatatatccatctgtgaaagtgttttgaaattatgcatatattttaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atatatatatatatatatatccatctgtgaaagtgttttgaaattatgcatatattttaa 730
Query: 339 taagatagctgctttaaagtagcaggacttttctgcaaaaaaaagagagagagaaaatta 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 taagatagctgctttaaagtagcaggacttttctgcaaaaaaaagagagagagaaaatta 670
Query: 399 tttagatatcaccaacatagaaatttttctaaaggtgggagtattctctgcatgcatcca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttagatatcaccaacatagaaatttttctaaaggtgggagtattctctgcatgcatcca 610
Query: 459 gacatgtatcatgtgctgtgtcatttttatgaggacacacacttatcagcaagtatttcc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gacatgtatcatgtgctgtgtcatttttatgaggacacacacttatcagcaagtatttcc 550
Query: 519 aatcagagtatcttcagtatctgctaattatattacataatattttagaac 569
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatcagagtatcttcagtatctgctaattatattacataatattttagaac 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_m03.g1 MSMg01no098_m03.g1 CHROMAT_FILE:
MSMg01no098_m03.g1 PHD_FILE: MSMg01no098_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:58 2005
(530 letters)
>mm_chr12_34140272_34141204
Length = 933
Score = 930 bits (481), Expect = 0.0
Identities = 516/529 (97%), Gaps = 5/529 (0%)
Strand = Plus / Plus
Query: 1 ctcagagctattttaagctcaaccacaggaacattgatgctttggagctgagtctcaaga 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagagctattttaagctcaaccaaaggaacattgatgctttggagctgagtctcaaga 260
Query: 61 ccaagtctgagtcagcgtgggatagtccaaccctggtattacagacatggatgcctgata 120
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 261 ccaagtctgagtcagcgtgggatagtccaaccctggtatttcagacgtggatgcctgata 320
Query: 121 caggtttgtgaagggaataaaagcaag---aaaaaaaaaatctaaaacaatactgtccag 177
||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 321 caggtgtgtgaagggaataaaagcaagaaaaaaaaaaaaaactaaaacaatactgtccag 380
Query: 178 cagcaggcagaccatcgttcactaacaggtactgcaaaaggtgacctcaagaccagaaca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaggcagaccatcgttcactaacaggtactgcaaaaggtgacctcaagaccagaaca 440
Query: 238 aacactgagactcatcctaatgaacgcttgaccattttctttgtttctccatagagctac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactgagactcatcctaatgaacgcttgaccattttctttgtttctccatagagctac 500
Query: 298 atcttctgttagtgacttacatggaagtaaaaaccctcacattatagcaaatggagaata 357
|||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 501 gtcttctgttagtgaattacatggaaataaaaacc-tcacattatagcaaatggagaata 559
Query: 358 gccctgagacatactttaatgcctgggtctatcagctagtctcaagctgaagtagaggct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gccctgagacatactttaatgcctgggtctatcagctagtctcaagctgaagtagaggct 619
Query: 418 aaatgtgtccatcagtttggtaataacaattccaaaagggcatgcaaagaga-tttttct 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 aaatgtgtccatcagtttggtaataacaattccaaaagggcatgcaaagagaatttttct 679
Query: 477 ggattagtacagaggcagtctctctctctctctctctctctctctctct 525
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggattagtacagaggcagtctctctctctctctctctctctctctctct 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 933
Length adjustment: 10
Effective length of query: 520
Effective length of database: 923
Effective search space: 479960
Effective search space used: 479960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
