BAC Information

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BAC

Clone NameMSMg01-099C14
Chromosome12 (Build37)
Map Location 55,175,916 - 55,176,057
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap6, Npas3
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C14.T7 (MSMg01no099_c14.b1)MSMg01-099C14.TJ (MSMg01no099_c14.g1)
ACCAG315162AG315163
length734734
length of high quality
(start - end)
42 (82 - 123)142 (60 - 201)
definitionCHROMAT_FILE: MSMg01no099_c14.b1 PHD_FILE: MSMg01no099_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:30 2005CHROMAT_FILE: MSMg01no099_c14.g1 PHD_FILE: MSMg01no099_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCG
GAATTCTATTATGAATCCGGAACTTAGATGCCCTTCACTCTTTAACTTTT
GTTCCCATAGCACTGAAAATGGAAAATGCTTTGGAAAAAAATCAAGGTGT
GGATCTTACGGAGCAGGAAAACATAGCAATGTGTGAACAATGTGTGCTCT
GTGCACGTGCGCTTGTAAACAGCAGATCTXXXXXXXXXXXXXXXXXXXXX
AGTATGGACCATAACTCTTTTTTTCCTGAAACAGACTTAGGTAAAACACA
TAACACATGAAAAACCTAGTCACACTCATTTTAACTTCTAACAATATTTT
TTCAACGCATTATTATTTCTCCATACAAACTGACCATTTCTATGCCCCCT
AATATCCTCCTGTTGTTCTGTGCCCCTTATTCTATCTAATTGGTCCACCC
ATTTTCTTATTTGGCCTGTAGGTTTGCCTCACCGATCTACCATGGCTTAA
CTTGACTGATACATCAACCCCCACATGATTTTGTCCCCGCGCCTAATTAC
CTTCCCTCTTAACCCTTTTAGCCTACCCCTTCCCTCCCCTGATTTAACCC
CCCTTGCCCCGTTTTTTTTTTTTCCCCCCCTACCCCTCCGTCCTTTTTCC
CCCCCCTTTATTCCCCTCTTCCCTTTATCTTTTTTTCTCGCTCTCTTCCT
TTTATTCTCTTCTACTCCGCTGCTTTTTTCTTCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCATATGCTCAGATGCCAGTGACCAGAGCATGAAAGAATTC
AGCCAACAATCCCATGGAGGGTGGAGGACTGGACTTCAGCCTACAGCTTT
ATGGAAGTTTTGACATCTATCTTCATATCTTTGAAAGCCACGCAGATTGG
AGGAGAGCTTAGATGTAGTCAGTTTGAAAGCAGAAGGAAGATTTCAGCTC
CAACCTTTTATTGTAACTTTCCAACAGTACCCCGCACACCTCTCAGCATT
CGAATGTCTACTCTGTTACGATCACTCCCCATTTTCCCTTTTTCTTTAAC
CGCCTTTGTTTTCACCACCCCGTTTGTCCAGTAGTTCATTTTACTAACCT
TTCCTCCGAAGTCATGCGTCTATTATGTTGTCCCGGCTGCTGGATACAAC
CTCATTCCTTGTTTACTCCGGCCCACCTGCTTTTTTTTCTCTTCTTTCCC
TCCTCCCGCCCTCCTATTGTAATTTTATGGGCCCCCACCCTATCACAGCT
TCTCTTTTTCTTCTTTTCTTTCCCCGGTTTTTTCTCCGCTCTTCTCTCTT
CCCCCCTCCCTTTTTTTTTTGTTCTCCCCCCCCTCTTACCCTCCTCCCCC
GTCTTCTCCCTTCTGCGCATTTATTCTCTCCCCTTTCGCCGCTATCTCCC
TTCTTGTGTCTCGCATCTCCCTTTTCTATTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c14.g1 MSMg01no099_c14.g1 CHROMAT_FILE:
MSMg01no099_c14.g1 PHD_FILE: MSMg01no099_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:30 2005
         (142 letters)



>mm_chr12_55175716_55176257
          Length = 542

 Score =  275 bits (142), Expect = 1e-78
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatatgctcagatgccagtgaccagagcatgaaagaattcagccaacaatcccatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcatatgctcagatgccagtgaccagagcatgaaagaattcagccaacaatcccatggag 283

                                                                       
Query: 61  ggtggaggactggacttcagcctacagctttatggaagttttgacatctatcttcatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtggaggactggacttcagcctacagctttatggaagttttgacatctatcttcatatc 223

                                 
Query: 121 tttgaaagccacgcagattgga 142
           ||||||||||||||||||||||
Sbjct: 222 tttgaaagccacgcagattgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)