BAC Information

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BAC

Clone NameMSMg01-099C21
Chromosome12 (Build37)
Map Location 64,977,034 - 64,977,576
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665741, EG382606
Downstream geneLOC435302, EG623046, LOC623123, LOC217645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C21.T7 (MSMg01no099_c21.b1)MSMg01-099C21.TJ (MSMg01no099_c21.g1)
ACCAG315176AG315177
length702703
length of high quality
(start - end)
547 (44 - 590)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no099_c21.b1 PHD_FILE: MSMg01no099_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005CHROMAT_FILE: MSMg01no099_c21.g1 PHD_FILE: MSMg01no099_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGTTGACCTAGTATAGAACACTGTATTTATTTCCTTGAGATTCA
TTTCAGATCCAAATGATAACCAGTGGATAAAATTTATCTTACAAAGCAGT
TTTATAGAAGCAATTTTCTTTTAGTAGTCTTTACTACAAAGATTGTTCTG
ATGATAAAATTTGTTTACTTGATACAGATTATTTATGCTGCTCTTCATCC
AGATAATATAATGTTATGCTCATTTGATACAAACACAGATATTTTATCAA
AATAATGACATCAGCACCAAATTCATTTAGTGTAAAATTTCTTTTATGTA
AAAATTTCCTTTATATTTCCAAATAAAGTAAACAAGTTATTAAAGATAAC
CAATGAATGCTGTGTATCCCTTTGGAGCAGATTTTTTTTAATACATTACA
AGTTCCTCCACATTATAAACCAATTTTAATGCTCAGCATGTATTTTCAAG
AGTGTGGACTAATTGAGATTCACACTGTTTAGACACAAATGCCTATATTG
CAATTGCATTAGGATTTCTTTTGTGACAGAATAATTATGATCCTATGCCA
CAATATTCACTATAAATAGGTCTGTTGATTGCCGTCAAATGTTCTCTGCC
AGTATCCTGTGTATTTTTCAGATATAGCTCAAATTACAACTAACAATTGA
AA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACTTATCTTCTCCAGTAC
AATATGTAGTTAGAATCAGACAGTATGTAGCTTTTTAAAGATTGGGTCTT
TCTTTCACTTAACAAGGTTAATGAATATGCTTTTAGGAATTGATGGCCCA
CATTCTTTTTTTTTTTTTTTTTTTTTTTTTGGCGGGGGTGCTTTTGTCCC
CGCCGGTAAGAGCACACTCAGGACAACCGGAATCTTCTGCTGCAAAAGCT
TTATTGCTTACTTCTCAGGAGGGAATACCCCGAAACGGGAAAATGGCGCT
GCTTATATAGTCCGCAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAG
CTCCTGATTCTTTGCTCGCCCATCAACCCATTACTACGCTGCGAGATGGG
CAGTGACTAGGTTCAATAGAGTTCACTCTTGCATTTGCACCCCAGGCTTG
TTTACTACCTAGGTGCACTGCAATCCACCGCCATCTTATAATGGTAATTG
CTCACTGCACGCACGCGATTGCTCGCCACACGGCTCTTCATAGTGTCGCT
CAGCGTGGTGTTGGTTTCTTATTACCGGGTTTCCCCGTTTTTTACTGGCT
GTCCTGTCACTCCCTTTTGTATACCCCCCCCCACATTTTCCACACCCTCC
GCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c21.b1 MSMg01no099_c21.b1 CHROMAT_FILE:
MSMg01no099_c21.b1 PHD_FILE: MSMg01no099_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:32 2005
         (547 letters)



>mm_chr12_64976830_64977776
          Length = 947

 Score =  973 bits (503), Expect = 0.0
 Identities = 534/547 (97%), Gaps = 8/547 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctgttgac---c-tagtatagaacactgtatttatttccttgagattcattt 60
           ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgttgactaacttagtatagaacactgtatttatttccttgagattcattt 264

                                                                       
Query: 61  cagatccaaatgataaccagtggataaaatttatcttacaaagcagttttatagaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagatccaaatgataaccagtggataaaatttatcttacaaagcagttttatagaagcaa 324

                                                                       
Query: 121 ttttcttttagtagtctttactacaaagattgttctgatgataaaatttgtttacttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttcttttagtagtctttactacaaagattgttctgatgataaaatttgtttacttgat 384

                                                                       
Query: 181 acagattatttatgctgctcttcatccagataatataatgttatgctcatttgatacaaa 240
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 385 acagattatttatgctgctcttcatccagata---taatgttatgctcatttgatacaaa 441

                                                                       
Query: 241 cacagatattttatcaaaataatgacatcagcaccaaattcatttagtgtaaaatttctt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 cacagatattttatcaaaataatgacatcaggaccaaattcatttagtgtaaaatttctt 501

                                                                       
Query: 301 ttatgtaaaaatttcctttatatttccaaataaagtaaacaagttattaaagataaccaa 360
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 502 ttatgtaaaattttcctttatatttccaaataaagtaaataagttattaaagataaccaa 561

                                                                       
Query: 361 tgaatgctgtgtatccctttggagcagattttttttaatacattacaagttcctccacat 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 562 tgaatgctgtgtatccctttggagcagattttttt-aatacattacaagttcctccaaat 620

                                                                       
Query: 421 tataaaccaattttaatgctcagcatgtattttcaagagtgtggactaattgagattcac 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tataaaccaattttaatgctcagcatgtattttcaagagagtggactaattgagattcac 680

                                                                       
Query: 481 actgtttagacacaaatgcctatattgcaattgcattaggatttcttttgtgacagaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgtttagacacaaatgcctatattgcaattgcattaggatttcttttgtgacagaata 740

                  
Query: 541 attatga 547
           |||||||
Sbjct: 741 attatga 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)