Query= MSMg01no100_e05.b1 MSMg01no100_e05.b1 CHROMAT_FILE:
MSMg01no100_e05.b1 PHD_FILE: MSMg01no100_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:04 2005
(625 letters)
>mm_chr12_37889884_37890909
Length = 1026
Score = 1116 bits (577), Expect = 0.0
Identities = 612/626 (97%), Gaps = 7/626 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttaattgc---cccatcttacccagaatgtgtactaaattgaattttgaatta 60
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaattgcaaac--atcttacccagaatgtgtactaaattgaattttgaatta 261
Query: 61 agcaatttaaaagttgtagtgagaagagtt-aggtattaaacatatgccaaatttcaata 119
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 262 agcaatttaaaagttgtagtgagaaga-ttcaggtattaaacatatgccaaatttcaata 320
Query: 120 aagtgattatataagtattctgtatttttggctcttttatattttgtgttggtatcttaa 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aagtgattgtataagtattctgtatttttggctcttttatattttgtgttggtgtcttaa 380
Query: 180 tgaaatccttcgcattcaatatatttgaaatggataacaacattacttttggtgtaaagt 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tgaaatccttcgcattcaatatatttgaaatgaataacaacattacttttggtgtaaagt 440
Query: 240 tttatcaacatatctaattcttttttggattttacattatgtttatggcatagaaaatga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tttatcaacatatctaattcttttttggattttacattatgtttatggcatagaaaagga 500
Query: 300 accattgagttgaattccaccaattagaagatactacttagtgataggcaatgattaaaa 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accattgagttgaattcctccaattagaagatactacttagtgataggcaatgattaaaa 560
Query: 360 tgaaaatgctcactagtgcttccatactcaaagtgaaggaacttggcaaagcatgggcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaaatgctcactagtgcttccatactcaaagtgaaggaacttggcaaagcatgggcaa 620
Query: 420 caaagaaaacagagcaaatacaaaaactcaagggcgtaagtggaatgaaggaatagttgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaagaaaacagagcaaatacaaaaactcaagggcgtaagtggaatgaaggaatagttgc 680
Query: 480 tgtattcaaattgtcccaaattcctttaactgcaatcatcttanaattacaaaggagaca 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tgtattcaaattgtcccaaattcctttaactgcaatcatcttaaaattacaaaggagaca 740
Query: 540 ggaagaagcaagattcactgtgttacaatgctttcaggtttacttgtggactgcagtgag 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaagaagcaagatccactgtgttacaatgctttcaggtttacttgtggactgcagtgag 800
Query: 600 gtgccaaggcaaagtcgttgcctgct 625
||||||||||||||||||||||||||
Sbjct: 801 gtgccaaggcaaagtcgttgcctgct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_e05.g1 MSMg01no100_e05.g1 CHROMAT_FILE:
MSMg01no100_e05.g1 PHD_FILE: MSMg01no100_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:04 2005
(552 letters)
>mm_chr12_38022423_38023369
Length = 947
Score = 1006 bits (520), Expect = 0.0
Identities = 542/552 (98%), Gaps = 5/552 (0%)
Strand = Plus / Minus
Query: 1 actctacagagcaggctggacatggattcagagacctgcttgactctgcctcctgagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 actctacagagcaggctggacatggattcagagacctgcttgactctgcctcctgagaga 782
Query: 61 tgggataaagatgcagaccaacatgctgagtttgaaaaagagtttctcagccaatatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgggataaagatgcagaccaacatgctgagtttgaaaaagagtttctcagccaatatgat 722
Query: 121 tattttttgttgttttgtttcttcaacaacttccaggtttcctctggagcactcgctccc 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 721 tattttttgttgttttgtttcctcaacaacttccaggtttcctctggagcactcactccc 662
Query: 181 tctcagactctttaaacatagtcgtaaatcacattttacttgggtagacgaagaaaagat 240
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 661 tctcagactctttaaacatagttgtaaatcacattttacttgggtagatgaagaaaagat 602
Query: 241 ggggataaataaaaattcattgtattcatcattcctaaattccttctagctcattataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggggataaataaaaattcattgtattcatcattcctaaattccttctagctcattataaa 542
Query: 301 gttttaaaataaacttattctatgctcctactggaaaacaaaaacaagataaaaaacaat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attttaaaataaacttattctatgctcctactggaaaacaaaaacaagataaaaaacaat 482
Query: 361 aatccatcacaatatataatcaaaataaaatagaaactatataagtgcaaaaaaaaaaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 481 aatccatcacaatatataatcaaaataaaatagaaactatataagtgc-----aaaaaaa 427
Query: 421 ccattgaaactataaactatagtagggatatagtatcagtgagagaagaataatgagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccattgaaactataaactatagtagggatatagtatcagtgagagaagaataatgagatg 367
Query: 481 caaacttaagcaccctcacataagccttgtaatcgagcattgtatcattcggtgcaagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaacttaagcaccctcacataagccttgtaatcgagcattgtatcattcggtgcaagga 307
Query: 541 tgttaaatttgt 552
||||||||||||
Sbjct: 306 tgttaaatttgt 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 947
Length adjustment: 10
Effective length of query: 542
Effective length of database: 937
Effective search space: 507854
Effective search space used: 507854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
