BAC Information

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BAC

Clone NameMSMg01-100J08
Chromosome12 (Build37)
Map Location 76,354,052 - 76,354,336
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971, Kcnh5
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100J08.T7 (MSMg01no100_j08.b1)MSMg01-100J08.TJ (MSMg01no100_j08.g1)
ACCAG316244AG316245
length943686
length of high quality
(start - end)
---285 (46 - 330)
definitionCHROMAT_FILE: MSMg01no100_j08.b1 PHD_FILE: MSMg01no100_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:29 2005CHROMAT_FILE: MSMg01no100_j08.g1 PHD_FILE: MSMg01no100_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCNNNNNNNNNNNNNNNCCCCCCCCNNCCNTNNNNTCCCNNCCCC
ATTTCCTCCCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGCGAATTCTCTCTTACCGTCACCGGATGGTAGACTCC
CCATCAAATACCAAACTGTACTAGAGCCTCTATTAGTCCATATGCCACGC
ACTTCATGATTGGCCGTAAACTTGGCTCCTATACTGTCGCTCTGCCGCGA
AATTCGTGATTCACCTCTGCGAACCCATGCTGGCATACTCAGCTCGCGAC
TTATACAATTCGTTTCCGTTCGTGCGTCTGTACTAACCCAGTCCCTACTA
AACTCTCATGTCCTTTGCGGTTGGTTTTCATCCGTCCTGCCTTCCCTACA
AATTCCACTTCTCCCCGCATGTTCTTTTTTCCCTCCCTCACTCCCCTCCA
CGCCATCTCGCCGAGACCCCGCGCTTCCTACATTCGCCCCCCTCGCCCCT
CGTTCCGCCTTTCCCCTGACTCCCTTGCCTTCTCCGTTTCTCCCTCCCTG
ACGCCCCCGCGCTGTCTTGTACCGACGCCTCAGTCTCGCCCCTCAGTACC
CGTGCGTATCCCACGCCTCCCTGTGCGTCCCCGCTCCCTCCGTGTTCTTG
CGCGTTGCTTCCGGAGCCTCCTCGCCGAGCTCACCCCAATCTCCCACCTT
CCCATTCCCTTTCTCCCTCATTCATTTTCCCTTATTTCTTTCCACTCCAC
TTCCCTACCGCACCCTCCCCCCACGCGCCGACGCGCCCCCAGCGAGCCGC
CACTCCGCTATGCCATTCCCGGTAGTGCGAAACCCCGCCGGGTCCACCGC
GAAGCCACCCTCGATGTCTTCTCTTCCCTCTCAAGGGTCTCACATTAGGG
AATCCCACAACACATTGGGCGGATTGACCCCGCCCCGTCCGTN
GTTCGACAAXXXXXXXXXXXXXXXXXXXTTTCCCCGAGAAATTCAAAGGG
AGAGGGGAGGGCCATATGGGAGGACCTGGAGGGAGGAAAGGGGAGGGAAA
ACATTGTAATTAAATTACATTCTCACAAATATAAAAATGCATTTTGGTAA
AAAGAAAACAACAAACAAAAAGCAAAAACCAATACGACAAGACCGGGGCT
TTTTGGGCATAGGACATAAAGTACTTTATATTCTGCTTATGCCCATGACT
AATGCTTTTAATTGTGGTTTATAAAAGAGTGAATTCTGTGTCTAGGGGAT
GATACAAAATTCAGTAGAAGATTGTGGAACTACAGATCCGACTGAGCCAG
GAAAATTGAGTCAGAGATAGGTGATGTGAGCTGAGGGTGACAACACACTA
GACACAGAGGAAAGAATGTTCTAGTACGATGACTCCAAGTGGCGGTTAAA
GCGACATTGCCCTTACCCAGTGGACAGCAGGTATAACCAATTCCATTCCT
GTCCATTTTCACAATTTGTTCCTTCTTTAGCACATTGCAATGCGTCCGAC
ATGAAACACCCTCCCTCCAAAAGACTGGCGAGCAGGGAATGCTCAACATT
CATGACCGGCCTCGGAGCTTAGGTTTTTCCTTGCACAGGTAAACACGCTA
ACTGGGCCCTTAAGTGCCGTCTTAAACATCAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_j08.g1 MSMg01no100_j08.g1 CHROMAT_FILE:
MSMg01no100_j08.g1 PHD_FILE: MSMg01no100_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:29 2005
         (285 letters)



>mm_chr12_76353760_76354444
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggagaggggagggccatatgggaggacctggagggaggaaaggggagggaaaacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aagggagaggggagggccatatgggaggacctggagggaggaaaggggagggaaaacatt 518

                                                                       
Query: 61  gtaattaaattacattctcacaaatataaaaatgcattttggtaaaaagaaaacaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtaattaaattacattctcacaaatataaaaatgcattttggtaaaaagaaaacaacaaa 458

                                                                       
Query: 121 caaaaagcaaaaaccaatacgacaagaccggggctttttgggcataggacataaagtact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caaaaagcaaaaaccaatacgacaagaccggggctttttgggcataggacataaagtact 398

                                                                       
Query: 181 ttatattctgcttatgcccatgactaatgcttttaattgtggtttataaaagagtgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttatattctgcttatgcccatgactaatgcttttaattgtggtttataaaagagtgaatt 338

                                                        
Query: 241 ctgtgtctaggggatgatacaaaattcagtagaagattgtggaac 285
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtgcctaggggatgatacaaaattcagtagaagattgtggaac 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)