Query= MSMg01no101_b08.b1 MSMg01no101_b08.b1 CHROMAT_FILE:
MSMg01no101_b08.b1 PHD_FILE: MSMg01no101_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:10 2005
(546 letters)
>mm_chr12_34267490_34268435
Length = 946
Score = 851 bits (440), Expect = 0.0
Identities = 446/450 (99%), Gaps = 4/450 (0%)
Strand = Plus / Minus
Query: 101 ttcctatgcattctgtattatcactactttgtagtcttatccctatgtgattctatatgc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttcctatgcattctgtattatcactactttgtagtcttatccctatgtgattctatatgc 887
Query: 161 aaatgtgtgtgataatatataaccatatatatccatatatatgtgtgtgtatatattcat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 aaatgtgtgtgataatatataaccatatatatccatatatatgtgtgtgtatatattcat 827
Query: 221 cacatagagaagatgttgagataatataatacgtatgtatacacacactc----acatat 276
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 826 cacatagagaagatgttgagataatataatacgtatgtatacacacactcacatacatat 767
Query: 277 atatatatatatatatatatccatctgtgaaagtgttttgaaattatgcatatattttaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atatatatatatatatatatccatctgtgaaagtgttttgaaattatgcatatattttaa 707
Query: 337 taagatagctgctttaaagtagcaggacttttctgcaaaaaaaagagagagagaaaatta 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 taagatagctgctttaaagtagcaggacttttctgcaaaaaaaagagagagagaaaatta 647
Query: 397 tttagatatcaccaacatagaaatttttctaaaggtgggagtattctctgcatgcatcca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tttagatatcaccaacatagaaatttttctaaaggtgggagtattctctgcatgcatcca 587
Query: 457 gacatgtatcatgtgctgtgtcatttttatgaggacacacacttatcagcaagtatttcc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gacatgtatcatgtgctgtgtcatttttatgaggacacacacttatcagcaagtatttcc 527
Query: 517 aatcagagtatcttcagtatctgctaatta 546
||||||||||||||||||||||||||||||
Sbjct: 526 aatcagagtatcttcagtatctgctaatta 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_b08.g1 MSMg01no101_b08.g1 CHROMAT_FILE:
MSMg01no101_b08.g1 PHD_FILE: MSMg01no101_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:10 2005
(300 letters)
>mm_chr12_34140272_34140974
Length = 703
Score = 495 bits (256), Expect = e-144
Identities = 288/300 (96%), Gaps = 3/300 (1%)
Strand = Plus / Plus
Query: 1 ctcagagctattttaagctcaaccacaggaacattgatgctttggagctgagtctcaaga 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagagctattttaagctcaaccaaaggaacattgatgctttggagctgagtctcaaga 260
Query: 61 ccaagtctgagtcagcgtgggatagtccaaccctggtattacagacatggatgcctgata 120
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 261 ccaagtctgagtcagcgtgggatagtccaaccctggtatttcagacgtggatgcctgata 320
Query: 121 caggtttgtgaagggaataaaagcaagaaaaaaaaaat---ctaaaacaatactgtccag 177
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 caggtgtgtgaagggaataaaagcaagaaaaaaaaaaaaaactaaaacaatactgtccag 380
Query: 178 cagcaggcataccatcgttcactaacaggtactgcaaaaggtgacctcaagaccagaaca 237
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaggcagaccatcgttcactaacaggtactgcaaaaggtgacctcaagaccagaaca 440
Query: 238 aacactgagactcttcttattgaacgcttgaccattttctttgtttctccatagagctac 297
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactgagactcatcctaatgaacgcttgaccattttctttgtttctccatagagctac 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 703
Length adjustment: 9
Effective length of query: 291
Effective length of database: 694
Effective search space: 201954
Effective search space used: 201954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
