BAC Information

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BAC

Clone NameMSMg01-101L19
Chromosome12 (Build37)
Map Location 47,520,433 - 47,520,921
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101L19.T7 (MSMg01no101_l19.b1)MSMg01-101L19.TJ (MSMg01no101_l19.g1)
ACCAG317072AG317073
length697736
length of high quality
(start - end)
550 (50 - 599)489 (73 - 561)
definitionCHROMAT_FILE: MSMg01no101_l19.b1 PHD_FILE: MSMg01no101_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:03 2005CHROMAT_FILE: MSMg01no101_l19.g1 PHD_FILE: MSMg01no101_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGTTTCGAGTAGAGGGGCGGAATTCCTTCTTTTTCCACTACATACATC
ATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGG
GTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGT
GGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGG
CAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCT
CTGTTGATTTTGTTACCCTCTAACAGCAGGCGTGGGAGACAAGCTCTCTT
CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCT
CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGG
TGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGG
AAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTG
TGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCG
CCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGCACTC
TGTATTCCACACGGTCACCCGTGCAGCCTGCCCTTCGCGGAATCCCGGAG
CCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAC
CATTGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGTGATTAGTAAATAATATTTTAGAAA
CCCAAATAATATACTATATTGAACATCTTCAGATTTAGGTTATAGGAAAG
AGATATGAAGTTTCTGCACATTTGCTGATTAAACAACTCACTTCTTTCAA
CATTCAAATTTTAGGTGCTTTTTCAAATATGAGGATAAAGGTTCAATGCT
CTTCAAAAGAACCCCCACGCACTTTATAAAATGGCTTATTTCCTAACATT
GGTAAATTTCCCTATATTCTATACTTCTCTTTAACATGAGATCTATGCCT
CTGCTGTGTCAGCAAACATGTTTTGTTGCTAGATAAAAGTCAGACTAGTT
GGGGTTGGAACATGTGTCGGGAATAGATAAACATCCGATGAGTCAGGGCT
GGAGAGATGGTTGAGTGGTTAAGAGCTGACTGCTCTTCCAGAGGATTTGG
TTCCAATTTTTAGCACCCACATGGCAGCTCAAAACTGTCTTCCGTTCTAG
CTCCTACATGCAGGCAAAGAGTAATGCACATAATATANAATTTTAAAAAA
ATGAAAACTAATCTCTTTTTCCATCTCCCCTCCCATGTGTTCATTTACAT
TAATAAATAAGCATCATGGTTCATTCTGTAACATCAAAACTAAACCAAAT
TACTCCTTGTAGTGACTTCGAAATAGAAAGAGAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_l19.g1 MSMg01no101_l19.g1 CHROMAT_FILE:
MSMg01no101_l19.g1 PHD_FILE: MSMg01no101_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:04 2005
         (489 letters)



>mm_chr12_47520233_47521121
          Length = 889

 Score =  907 bits (469), Expect = 0.0
 Identities = 484/489 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgattagtaaataatattttagaaacccaaataatatactatattgaacatcttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tggtgattagtaaataatattttagaaacccaaataatatactatattgaatatcttcag 260

                                                                       
Query: 61  atttaggttataggaaagagatatgaagtttctgcacatttgctgattaaacaactcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaggttataggaaagagatatgaagtttctgcacatttgctgattaaacaactcact 320

                                                                       
Query: 121 tctttcaacattcaaattttaggtgctttttcaaatatgaggataaaggttcaatgctct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tctttcaacattcaaattttaggtgctttttcaaatatgaggataaagattcaatgctct 380

                                                                       
Query: 181 tcaaaagaacccccacgcactttataaaatggcttatttcctaacattggtaaatttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaagaacccccacgcactttataaaatggcttatttcctaacattggtaaatttccc 440

                                                                       
Query: 241 tatattctatacttctctttaacatgagatctatgcctctgctgtgtcagcaaacatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatattctatacttctctttaacatgagatctatgcctctgctgtgtcagcaaacatgtt 500

                                                                       
Query: 301 ttgttgctagataaaagtcagactagttggggttggaacatgtgtcgggaatagataaac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ttgttgctagataaaagtcagactagttggggttggaacatgtgttgggaatagataaac 560

                                                                       
Query: 361 atccgatgagtcagggctggagagatggttgagtggttaagagctgactgctcttccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 atccgatgagtcagggctggagagatggttgagtggttaagagctgactgctcttcccga 620

                                                                       
Query: 421 ggatttggttccaatttttagcacccacatggcagctcaaaactgtcttccgttctagct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 ggatttggttccaatttttagcacccacatggcagctcaaaactgtcttccgttctagtt 680

                    
Query: 481 cctacatgc 489
           |||||||||
Sbjct: 681 cctacatgc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)